HHsearch alignment for GI: 254780332 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=94.48 E-value=0.18 Score=30.67 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHH-C-CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4336778999998741-1-2366443210137765564167726776213100276999999999985101112333332
Q gi|254780332|r 180 DAMTVAIDMAGQAFNR-D-GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY 257 (504)
Q Consensus 180 ~~~~~~~~~~~~~~~~-~-~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~ 257 (504)
T Consensus 167 ~~L~ky~~dLt~~Ar~gklDPviGR~~Ei~r~i~iL~R-r~KNNpiLvGepGVGKTAIvEGLA~rI~~g-~VP~~----- 239 (758)
T PRK11034 167 ERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAWRIVQG-DVPEV----- 239 (758)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCEEECCCCCCHHHHHHHHHHHHHCC-CCCHH-----
T ss_conf 58999856479999828999873848999999999976-325896021699986999999999999738-99765-----
Q ss_pred CCCCCCEEEEEECCCCHH--------HHHHHHHHHH
Q ss_conf 124797589995852179--------9987899998
Q gi|254780332|r 258 KTINGGIVGFYSLEMSSE--------QLATRIISEQ 285 (504)
Q Consensus 258 ~~~~g~~Vl~fSlEMs~~--------el~~R~is~~ 285 (504)
T Consensus 240 --L~~--~~i~~Ldl~~LiAGtkyRGefEeRlk~vi 271 (758)
T PRK11034 240 --MAD--CTIYSLDIGSLLAGTKYRGDFEKRFKALL 271 (758)
T ss_pred --HCC--CEEEEEEHHHHHCCCCCCHHHHHHHHHHH
T ss_conf --589--88998458778616864154999999999