HHsearch alignment for GI: 254780332 and conserved domain: PRK11247
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional.
Probab=96.83 E-value=0.01 Score=40.14 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=85.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
T Consensus 27 ~L~dIs~~I~~GEiv~LiG~nGaGKSTLlr~i~-Gl~~p~-------------~G-~I~~~~~~i~~~~~~i~~vfQ~~~ 91 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLA-GLETPT-------------AG-DLLAGTAPLAEAQEDTRLMFQDAR 91 (257)
T ss_pred EECCEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCC-------------CC-EEEECCEEHHHHHHCEEEEECCCC
T ss_conf 982407588799899999899888999999996-589888-------------87-089898755443110079932564
Q ss_pred -HCCCC----CCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf -10110----00121376889989999999862780782589-9889999--9988640224447467767135325664
Q gi|254780332|r 288 -VPSSK----IRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 288 -I~~~~----i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
T Consensus 92 l~~~~tV~eni~~g-l~~~~~~~~~e~l~~vg-L~~~~~~~p~~LSGGqkQRvaiAraL~--~~P~lLlLD-----EPts 162 (257)
T PRK11247 92 LLPWKKVIDNVGLG-LKGQWRDAALQALAAVG-LADRANEWPAALSGGQKQRVALARALI--HRPRLLLLD-----EPLG 162 (257)
T ss_pred CCCCCCHHHHHHHH-CCCCHHHHHHHHHHHCC-CCHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC
T ss_conf 47677899998632-14106999999999859-913553694448999999999999984--599999980-----9876
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 163 g-LD~--~~~~~i~~ll~~L~~e~g~TIi~vTH----------------d---l~ea~~laDRI~vm~~ 209 (257)
T PRK11247 163 A-LDA--LTRIEMQDLIESLWQQHGFTVLLVTH----------------D---VSEAVAMADRVLLIEE 209 (257)
T ss_pred C-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf 5-799--99999999999999960989999887----------------9---9999996999999989