HHsearch alignment for GI: 254780332 and conserved domain: PRK11300
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.
Probab=96.55 E-value=0.03 Score=36.59 Aligned_cols=180 Identities=14% Similarity=0.247 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHH
Q ss_conf 1013776556416772677621310027699999999998510111233333212479758999585---2179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~R~ 281 (504)
T Consensus 17 ~~~al~~vs~~v~~Gei~~liGpnGaGKSTL~~~i~-Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~r~g 81 (255)
T PRK11300 17 GLLAVNNVNLEVREQEVVSLIGPNGAGKTTVFNCLT-GFYKP--------------TGGTILLDGQHIEGLPGHQIARMG 81 (255)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCC
T ss_conf 999880408898999799999899964999999996-79889--------------860899999988879999998668
Q ss_pred H---------------------HHHHHHCCCC----CCCCCCCHHHHHHHHHHHHHHHHCCEE-EECCC--CCCHHH--H
Q ss_conf 9---------------------9987410110----001213768899899999998627807-82589--988999--9
Q gi|254780332|r 282 I---------------------SEQTEVPSSK----IRRGELTRPDYEKIVACSQVMQKLPLY-IDQTG--GISMSQ--L 331 (504)
Q Consensus 282 i---------------------s~~s~I~~~~----i~~g~l~~~e~~~i~~a~~~l~~~~l~-I~d~~--~~ti~~--I 331 (504)
T Consensus 82 ~~~~~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~Qr 161 (255)
T PRK11300 82 VVRTFQHVRLFKEMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRR 161 (255)
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCHHHHH
T ss_conf 25532230027786487776555442022003433212520106689999999999997699213158846679488999
Q ss_pred HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99886402244474677671353256644321137889999999999998827919997713822016899998401014
Q gi|254780332|r 332 ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLR 411 (504)
Q Consensus 332 ~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr 411 (504)
T Consensus 162 v~iAraL~--~~P~lLlLD-----EPt~g-LD--~~~~~~i~~~i~~l~~~~g~tvl~itH----------------d-- 213 (255)
T PRK11300 162 LEIARCMV--TQPRILMLD-----EPAAG-LN--PKETKELDELIAELRNEHNVTVLLIEH----------------D-- 213 (255)
T ss_pred HHHHHHHH--HCCCEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHHHCCCCEEEEECC----------------C--
T ss_conf 99999997--299969981-----87546-99--999999999999999715979999927----------------3--
Q ss_pred CCCHHHHHCCEEEEEEC
Q ss_conf 32422331387889725
Q gi|254780332|r 412 ESGSIEQDADVVLFVIR 428 (504)
Q Consensus 412 ~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 214 -l~~v~~~aDrv~vl~~ 229 (255)
T PRK11300 214 -MKLVMGISDRIYVVNQ 229 (255)
T ss_pred -HHHHHHHCCEEEEEEC
T ss_conf -8999986999999999