HHsearch alignment for GI: 254780332 and conserved domain: PRK11784
>PRK11784 tRNA 2-selenouridine synthase; Provisional.
Probab=96.01 E-value=0.045 Score=35.27 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=58.5
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
T Consensus 118 ~~l~GGYKayR~~v~~~l~~-~~~vl~G~TG~GKT~lL~~L~~-------------------~G~~vi--DL----EglA 171 (333)
T PRK11784 118 PLLEGGYKAYRRFVIDTLEE-PLVVLGGMTGSGKTRLLQALAN-------------------AGAQVL--DL----EGLA 171 (333)
T ss_pred CCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHH-------------------CCCCEE--CH----HHHH
T ss_conf 60376089999999998546-8599867888778999999997-------------------599743--38----9886
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEEEECCCC
Q ss_conf 78999987410110001213768899-899999998627807825899
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYE-KIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~I~d~~~ 325 (504)
T Consensus 172 ~HRGS~FG~~~~-----~QPsQk~FE~~L~~~l~~~~~~~i~vE~ESr 214 (333)
T PRK11784 172 NHRGSSFGRLGG-----PQPSQKDFENLLAEALLKLDPAPIVVEDESR 214 (333)
T ss_pred HCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 325642358899-----9987899999999999808998569960100