HHsearch alignment for GI: 254780332 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=99.83 E-value=9.9e-19 Score=162.07 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=156.3
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
T Consensus 70 ~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la----------------~~~~vLYvSGEES~~Qik 133 (454)
T PRK11823 70 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA----------------AGGKVLYVSGEESLQQIK 133 (454)
T ss_pred CCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----------------CCCCEEEECCCHHHHHHH
T ss_conf 5323785566522158720664899507998889999999999985----------------599579981501578999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 78999987410110001213768899899999998627807825899889999998864022444746776713532566
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
T Consensus 134 ~RA~R--Lg-------------------------~~~~~l~l~~e--t~l~~Il~~i~~~----~P~~lIIDSIQT~~~~ 180 (454)
T PRK11823 134 LRAER--LG-------------------------LPSDNLYLLAE--TNLEDILATIEEE----KPDLVVIDSIQTMYSP 180 (454)
T ss_pred HHHHH--HC-------------------------CCCCCCEEEEC--CCHHHHHHHHHHH----CCCEEEEECHHEEEEC
T ss_conf 99997--58-------------------------88887378853--6899999999860----9988999431115415
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 44-32113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 359 KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 359 ~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
T Consensus 181 ~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG-----------~iAGPkvLEHmVDtVl~fEGd~------- 242 (454)
T PRK11823 181 ELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEG-----------AIAGPRVLEHMVDTVLYFEGDR------- 242 (454)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----------CCCCCHHHHHHHCEEEEECCCC-------
T ss_conf 6677899789999999999999974498289999772677-----------6466145222010468751576-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCC
Q ss_conf 3332221110000001123388389999740899725999997468540200774
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSD 492 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~ 492 (504)
T Consensus 243 -------------------~~~~RiLR~~KNRFG~t~EiGv-FeM~~~GL~~v~n 277 (454)
T PRK11823 243 -------------------HSRFRILRAVKNRFGATNEIGV-FEMTEKGLREVSN 277 (454)
T ss_pred -------------------CCCCEEEEEECCCCCCCCEEEE-EEECCCCCEECCC
T ss_conf -------------------6550245631246776660589-9861688456688