HHsearch alignment for GI: 254780332 and conserved domain: PRK13235
>PRK13235 nifH nitrogenase reductase; Reviewed.
Probab=95.76 E-value=0.17 Score=30.92 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=73.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC---CCC
Q ss_conf 77621310027699999999998510111233333212479758999585217999878999987410110001---213
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR---GEL 298 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~---g~l 298 (504)
T Consensus 4 iaiyGKGGVGKSTtt~NLaAALA~---------------~GkkVl~IgcDPk~d--sT~~L--~gg~~~~tvld~l~~~~ 64 (274)
T PRK13235 4 VAIYGKGGIGKSTTTQNTVAGLAE---------------MGKKVMVVGCDPKAD--STRLL--LGGLQQKTVLDTLREEG 64 (274)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEECCCCCCC--HHHHH--HCCCCCCCHHHHHHHCC
T ss_conf 999799855476789999999997---------------899799989898453--66787--38998997899998628
Q ss_pred CHHHHHHHHHHHHHHHHCCEEEEC--------CCCCCHHHHHHHHHHH---CCCCCCCEEEECCHHHCCCCCCC------
Q ss_conf 768899899999998627807825--------8998899999988640---22444746776713532566443------
Q gi|254780332|r 299 TRPDYEKIVACSQVMQKLPLYIDQ--------TGGISMSQLATRARRL---KRQRGLDLLIVDYIQLMTTSKKI------ 361 (504)
Q Consensus 299 ~~~e~~~i~~a~~~l~~~~l~I~d--------~~~~ti~~I~~~~r~~---~~~~gi~~vvIDYLqli~~~~~~------ 361 (504)
T Consensus 65 ~~~---~ledvi~~g~~gi~cveaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcggFa~pir~~ 141 (274)
T PRK13235 65 EDV---ELEDIIKEGYGNTRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDG 141 (274)
T ss_pred CCC---CHHHHEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 776---77894431789818986899875667576315258999988177543357768998137853124511551006
Q ss_pred -C-------CHHHH---HHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf -2-------11378---89999999999998827919997
Q gi|254780332|r 362 -E-------ENRVL---EITGITMALKALAKELNIPIIAL 390 (504)
Q Consensus 362 -~-------~~r~~---~i~~is~~lK~lA~e~~ipvi~l 390 (504)
T Consensus 142 ~A~eV~IVts~E~~AL~aannI~k~i~~~~~~~~~~l~Gi 181 (274)
T PRK13235 142 KAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGL 181 (274)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5878999916836899999999999999974379548899