HHsearch alignment for GI: 254780332 and conserved domain: PRK13409
>PRK13409 putative ATPase RIL; Provisional.
Probab=97.16 E-value=0.011 Score=39.90 Aligned_cols=177 Identities=17% Similarity=0.254 Sum_probs=96.6
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE------CCCCHHHHHHHHHHH-----
Q ss_conf 167726776213100276999999999985101112333332124797589995------852179998789999-----
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS------LEMSSEQLATRIISE----- 284 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS------lEMs~~el~~R~is~----- 284 (504)
T Consensus 362 i~~GEiigIvG~NGaGKTTLlKiLaG~l-kPd~--------G~V~~~~~isY~pQ~i~~d~~~tV~~~L~~~~~~~~~~~ 432 (590)
T PRK13409 362 IRKGEVIGIVGPNGIGKTTFVKLLAGVL-KPDE--------GEVDTDLKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC-CCCC--------CEEEECCEEEECCHHCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 6047489998888887899999982887-7887--------447547748733600146868819999986244225389
Q ss_pred -----HHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCC--CCCHHH---HHHHHHHHCCCCCCCEEEECC
Q ss_conf -----87410110001---21376889989999999862780782589--988999---999886402244474677671
Q gi|254780332|r 285 -----QTEVPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTG--GISMSQ---LATRARRLKRQRGLDLLIVDY 351 (504)
Q Consensus 285 -----~s~I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~--~~ti~~---I~~~~r~~~~~~gi~~vvIDY 351 (504)
T Consensus 433 ~~~ell~~L~l~~lldk~v~~LSGGEkQRvaLA~~L~~~anvLLLDEPTn~LDvE~R~~~~k~i~~~~~~~~~t~~vV~H 512 (590)
T PRK13409 433 YKSEIIKPLNLEKLLDRNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAYLDVEQRLAVARAIRRIAEEKEKAALVVDH 512 (590)
T ss_pred HHHHHHHHHCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999988788867649624409899999999998667999999948988778899999999999999866975999947
Q ss_pred HHHC---------CCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 3532---------566443211-3788999999999999882791999771382201689999840101
Q gi|254780332|r 352 IQLM---------TTSKKIEEN-RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDL 410 (504)
Q Consensus 352 Lqli---------~~~~~~~~~-r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDL 410 (504)
T Consensus 513 D~~~~d~lsdrv~vf~G~p~~~~~a~~p~~~~~gmn~fl~~~~itfr------rd~---~~~rprink~ 572 (590)
T PRK13409 513 DIYMIDYISDRLMVFEGEPGKHGHASGPLDMREGMNRFLKELGITFR------RDE---ETGRPRVNKP 572 (590)
T ss_pred CHHHHHHHCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHCCCEEE------ECC---CCCCCCCCCC
T ss_conf 09999876166999817887651405984478999999987793783------178---8899875887