HHsearch alignment for GI: 254780332 and conserved domain: PRK13538
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional.
Probab=96.73 E-value=0.028 Score=36.81 Aligned_cols=171 Identities=18% Similarity=0.144 Sum_probs=76.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCEEEEEE------CCCCHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247----97589995------85217999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTIN----GGIVGFYS------LEMSSEQL 277 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~----g~~Vl~fS------lEMs~~el 277 (504)
T Consensus 16 vl~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~ltv~en 94 (204)
T PRK13538 16 LFEGLSFTLNAGELVQIEGPNGAGKTSLLRILA-GLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN 94 (204)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf 980517798799899999999985999999997-6888887379999999764888888447874542445655829999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEE-EECC--CCCCHHHHH--HHHHHHCCCCCCCEEEECCH
Q ss_conf 878999987410110001213768899899999998627807-8258--998899999--98864022444746776713
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLY-IDQT--GGISMSQLA--TRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~-I~d~--~~~ti~~I~--~~~r~~~~~~gi~~vvIDYL 352 (504)
T Consensus 95 l~-~~~~~---------~~~~~~---~~~~~~L~~~---gL~~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLD-- 154 (204)
T PRK13538 95 LR-FYQRL---------HGPADD---DAIWEALAQV---GLAGFEDVPARQLSAGQQRRVALARLWL--TRAPLWILD-- 154 (204)
T ss_pred HH-HHHHH---------CCCCCH---HHHHHHHHHC---CCCHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE--
T ss_conf 99-99985---------599638---9999999986---9911332882248999999999999996--099989997--
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 155 ---EPt~~-LD--~~~~~~l~~~l~~~~~~g~-~vi~~tH---------------------~dl~~~ad~v~vl~ 201 (204)
T PRK13538 155 ---EPFTA-ID--KQGVARLEQLLAQHAEQGG-MVILTTH---------------------QDLPGASDKVRKLR 201 (204)
T ss_pred ---CCCCC-CC--HHHHHHHHHHHHHHHHCCC-EEEEEEC---------------------HHHHHHCCEEEEEC
T ss_conf ---88657-89--9999999999999985899-8999986---------------------69898769999973