HHsearch alignment for GI: 254780332 and conserved domain: PRK13542
>PRK13542 consensus.
Probab=96.03 E-value=0.12 Score=31.91 Aligned_cols=165 Identities=15% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCEEEEE------ECCCCHHHHH
Q ss_conf 776556416772677621310027699999999998510111233333212----479758999------5852179998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT----INGGIVGFY------SLEMSSEQLA 278 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~----~~g~~Vl~f------SlEMs~~el~ 278 (504)
T Consensus 34 l~~isl~i~~Gei~~liGpNGaGKTTLlk~l~Gll-~p~~G~I~~~G~~i~~~~~~~~~~~~~v~~~~~l~~~ltv~enl 112 (224)
T PRK13542 34 FRGIDISLAPGDLLQVMGPNGSGKTSLLRVLSGLM-PPAEGDLYWRGRAVRAGDPDYLQQLAYVGHANGIDPDLSAFENL 112 (224)
T ss_pred EECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHHH
T ss_conf 84616787599799999999999999999995797-88852899999999879988884447866633358787299999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 789999874101100012137688998999999986278078258998899999--988640224447467767135325
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
T Consensus 113 -~~~~~~~~~~---------~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~--~~p~illLD-----E 173 (224)
T PRK13542 113 -RFAARLAGQQ---------A--TADAVHHALARFGLDRVMHAPARTLSQGQRRRVALARLAL--TPRALWLLD-----E 173 (224)
T ss_pred -HHHHHHCCCC---------C--HHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----C
T ss_conf -9999873887---------4--6999999999849902546881249999999999999980--799889973-----8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 6644321137889999999999998827919997713822
Q gi|254780332|r 357 TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQ 396 (504)
Q Consensus 357 ~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~ 396 (504)
T Consensus 174 Ptag-LD--~~~~~~l~~~i~~~~~~g~tvIi~tH~l~~~ 210 (224)
T PRK13542 174 PLTS-LD--DASAACFHTLLDEHLRRGGMAVVATHQLLPG 210 (224)
T ss_pred CCCC-CC--HHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 5354-89--9999999999999996899899995887488