HHsearch alignment for GI: 254780332 and conserved domain: PRK13549
>PRK13549 xylose transporter ATP-binding subunit; Provisional.
Probab=96.95 E-value=0.013 Score=39.45 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 98899999--9886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
T Consensus 405 ~LSGGq~QRv~iAraL~--~~P~iLilD-----EPT~-GLD~--~~~~~i~~ll~~l~~~-G~tvl~iSH---------- 463 (513)
T PRK13549 405 RLSGGNQQKAILAKCLL--LNPRILILD-----EPTR-GIDV--GAKYEIYKLINQLVQQ-GVAIIVISS---------- 463 (513)
T ss_pred CCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC-CCCH--HHHHHHHHHHHHHHHC-CCEEEEEEC----------
T ss_conf 39999999999999997--199899997-----9866-8999--9999999999999957-999999918----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 464 ------D---l~~v~~~aDRV~Vm~~ 480 (513)
T PRK13549 464 ------E---LPEVLGLSDRVLVMHE 480 (513)
T ss_pred ------C---HHHHHHHCCEEEEEEC
T ss_conf ------6---8999986999999989