HHsearch alignment for GI: 254780332 and conserved domain: PRK13826

>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=96.34  E-value=0.02  Score=37.85  Aligned_cols=114  Identities=18%  Similarity=0.169  Sum_probs=74.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r  218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE  297 (504)
Q Consensus       218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~  297 (504)
T Consensus       396 ~~~Ia~VvG~AGaGKSt-mL~aAReawE--------------a~GyrV~GaAL----sGkAAegLe~~sGI~SrTlAs~-  455 (1102)
T PRK13826        396 AERIAAVIGRAGAGKTT-MMKAAREAWE--------------AAGYRVVGGAL----AGKAAEGLEKEAGIASRTLSSW-  455 (1102)
T ss_pred             CCCEEEEEECCCCCHHH-HHHHHHHHHH--------------HCCCEEEEECC----CHHHHHHHHHCCCCCCHHHHHH-
T ss_conf             88668998428887889-9999999999--------------77977980150----0789997753469530338999-


Q ss_pred             CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE-CCHHHCC
Q ss_conf             3768899899999998627807825899889999998864022444746776-7135325
Q gi|254780332|r  298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIV-DYIQLMT  356 (504)
Q Consensus       298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvI-DYLqli~  356 (504)
T Consensus       456 -----e~~w~~gr~~L~~~dVlVIDEAGMVgsrqmarvl~~ae~aGAKvVLVGD~~QLQp  510 (1102)
T PRK13826        456 -----ELRWNQGRDQLDNKTVFVLDEAGMVSSRQMALFVEAVTRAGAKLVLVGDPEQLQP  510 (1102)
T ss_pred             -----HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCC
T ss_conf             -----9874358655678738998455565579999999999975998999688788276