HHsearch alignment for GI: 254780332 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=96.34 E-value=0.02 Score=37.85 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
T Consensus 396 ~~~Ia~VvG~AGaGKSt-mL~aAReawE--------------a~GyrV~GaAL----sGkAAegLe~~sGI~SrTlAs~- 455 (1102)
T PRK13826 396 AERIAAVIGRAGAGKTT-MMKAAREAWE--------------AAGYRVVGGAL----AGKAAEGLEKEAGIASRTLSSW- 455 (1102)
T ss_pred CCCEEEEEECCCCCHHH-HHHHHHHHHH--------------HCCCEEEEECC----CHHHHHHHHHCCCCCCHHHHHH-
T ss_conf 88668998428887889-9999999999--------------77977980150----0789997753469530338999-
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE-CCHHHCC
Q ss_conf 3768899899999998627807825899889999998864022444746776-7135325
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIV-DYIQLMT 356 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvI-DYLqli~ 356 (504)
T Consensus 456 -----e~~w~~gr~~L~~~dVlVIDEAGMVgsrqmarvl~~ae~aGAKvVLVGD~~QLQp 510 (1102)
T PRK13826 456 -----ELRWNQGRDQLDNKTVFVLDEAGMVSSRQMALFVEAVTRAGAKLVLVGDPEQLQP 510 (1102)
T ss_pred -----HHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCC
T ss_conf -----9874358655678738998455565579999999999975998999688788276