HHsearch alignment for GI: 254780332 and conserved domain: TIGR00665
>TIGR00665 DnaB replicative DNA helicase; InterPro: IPR007692 This family includes the replicative DNA helicases, helicase DnaB, which exhibit DNA-dependent ATPase activity. Helicase DnaB is a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of more than 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. Replication protein, GP12 from Bacteriophage P22 also belongs to this family .; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=623.46 Aligned_cols=446 Identities=43% Similarity=0.655 Sum_probs=415.6
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHHCCC-
Q ss_conf 02678997899999999983297899999944296663798889999999999983998------68643888973179-
Q gi|254780332|r 19 QYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKT------ANPVTVKTFLSDQD- 91 (504)
Q Consensus 19 ~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~------iD~itl~~~L~~~~- 91 (504)
T Consensus 2 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dfy~~~~~~~~~~~~~l~~~~~p~~g~~l~d~~~~~~~~~~~~~ 81 (465)
T TIGR00665 2 NLALPPQNIEAERAVLGGIFLDNEGIDLIAEKLEPDDFYTFPHRLIFEAMLSLYEEGEPLFGSGLIDLVTVKEELPDHGK 81 (465)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 64443113467899898775131345667776532333010268999999996204786311012445665555303564
Q ss_pred -----CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----832359489999999622112223677878789999999998765567751234445315666876554444320
Q gi|254780332|r 92 -----MLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLA 166 (504)
Q Consensus 92 -----~l~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~ 166 (504)
T Consensus 82 ~~~~~~~~~~~g~~~l~~l~~~~p~~~~i~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (465)
T TIGR00665 82 TQLLITLDEIGGLFYLVLLSNLTPTAANIEAYADIVKEKSILRRLISVAKEIAEEGYESKG-DEIEDILDEAERKIFKIA 160 (465)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 0003322233116788887514752457899999997689999999866678762023233-046788988888999987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 113446654301343367789999987411--236644321013776556416772677621310027699999999998
Q gi|254780332|r 167 ENGRYDGGFHTFSDAMTVAIDMAGQAFNRD--GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVA 244 (504)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A 244 (504)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gf~~ld~~~~G~~~~~l~~~~arP~~Gkt~~~~n~~~~~~ 240 (465)
T TIGR00665 161 ESRTSSEGLQNIKEVLESTEDLIDKLYRKENHLGVTGIPTGFYDLDKLTGGFQPGDLIIVAARPSMGKTAFALNIAANAA 240 (465)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 52000124420889999999888887402332225666532013445432677565588833787525889999998776
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCEEEECC
Q ss_conf 51011123333321247975899958521799987899998741011000121376889989999999862-78078258
Q gi|254780332|r 245 DAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQK-LPLYIDQT 323 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~-~~l~I~d~ 323 (504)
T Consensus 241 ~~~---------~~~~~~~~~~~fsle~~~~~~~~r~~~~~~~~~~~~~~~g~l~~~~~~~l~~~~~~~~~~~~~~~~d~ 311 (465)
T TIGR00665 241 NRE---------KFDKEDKPVLFFSLEMSAEQLALRLLASESRIDSTKLRTGRLDDEEWEKLTKAMGELSDKLPLYIDDT 311 (465)
T ss_pred HHH---------HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 432---------02423350378851467799999998765310134432003237788889999887530156224205
Q ss_pred CCCCHHHHHHHHHHHCCCC-C-CCEEEECCHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 9988999999886402244-4-746776713532566443-211378899999999999988279199977138220168
Q gi|254780332|r 324 GGISMSQLATRARRLKRQR-G-LDLLIVDYIQLMTTSKKI-EENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR 400 (504)
Q Consensus 324 ~~~ti~~I~~~~r~~~~~~-g-i~~vvIDYLqli~~~~~~-~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r 400 (504)
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~gp~~~~~~dyl~l~~~~~~~~~~~r~~~~~~i~~~lk~~a~e~~~P~~al~~l~r~~e~r 391 (465)
T TIGR00665 312 SGITLTEIRSQARRLKRESGGPLGLILIDYLQLISGSKNSYGDNRHQEVAEISRSLKALARELNVPVIALSQLSRSLEER 391 (465)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 77529999999999886417850101234577741000235640468899998999988877414166566653223201
Q ss_pred CCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 99998401014324223313878897255661644233332221110000001123388389999740899725999997
Q gi|254780332|r 401 DNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480 (504)
Q Consensus 401 ~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f 480 (504)
T Consensus 392 ~d~rP~~~dlresG~~e~dad~~~~~~r~~~~~~~~~~~~~~~-------------~~~~~e~~~~k~rnGp~G~~~~~f 458 (465)
T TIGR00665 392 KDKRPILSDLRESGSIEQDADLVLFLYRDEDYDKESEDKGGPK-------------NLFEAELIIAKNRNGPTGTVKLLF 458 (465)
T ss_pred CCCCCCHHHHHHCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCC-------------HHEEEEEEEEECCCCCCCEEEEEE
T ss_conf 3456312333321675322101211000100365431124552-------------000000000003678741488754
Q ss_pred ECCCCCE
Q ss_conf 4685402
Q gi|254780332|r 481 QAEFTRF 487 (504)
Q Consensus 481 ~~~~~~f 487 (504)
T Consensus 459 ~~~~~~f 465 (465)
T TIGR00665 459 NPEFTRF 465 (465)
T ss_pred CCCCCCC
T ss_conf 4752369