HHsearch alignment for GI: 254780332 and conserved domain: TIGR01587

>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=95.89  E-value=0.038  Score=35.83  Aligned_cols=158  Identities=16%  Similarity=0.198  Sum_probs=84.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC---CC-CCC
Q ss_conf             67762131002769999999999851011123333321247975899958521799987899998741011---00-012
Q gi|254780332|r  221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSS---KI-RRG  296 (504)
Q Consensus       221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~---~i-~~g  296 (504)
T Consensus         1 ~~v~~APTG~GKTe~aL~~A~~sah~~k~~---------~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~s   71 (424)
T TIGR01587         1 LLVIEAPTGYGKTEAALLWALKSAHLIKKQ---------KADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHS   71 (424)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHH---------HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             968861789987899999998636664224---------44010122026888999999999867754178543233455


Q ss_pred             -CCCHHHH-------------HHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHH-----HCCC----CC--CCEEEE
Q ss_conf             -1376889-------------9899999998627--807825899889999998864-----0224----44--746776
Q gi|254780332|r  297 -ELTRPDY-------------EKIVACSQVMQKL--PLYIDQTGGISMSQLATRARR-----LKRQ----RG--LDLLIV  349 (504)
Q Consensus       297 -~l~~~e~-------------~~i~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~-----~~~~----~g--i~~vvI  349 (504)
T Consensus        72 srfnh~~~~ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~  151 (424)
T TIGR01587        72 SRFNHLASSIKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIF  151 (424)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             22678999999877630478279999998522421210131788534122000000553445205688887777676562


Q ss_pred             CCHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCEEEEE-ECCCC
Q ss_conf             7135325664432113788999-99999999988279199977-13822
Q gi|254780332|r  350 DYIQLMTTSKKIEENRVLEITG-ITMALKALAKELNIPIIALS-QLSRQ  396 (504)
Q Consensus       350 DYLqli~~~~~~~~~r~~~i~~-is~~lK~lA~e~~ipvi~ls-QLnR~  396 (504)
T Consensus       152 DE~h~y~~~~~---------~~~~l~~L~~~~~~~~~~~~lMsATlP~~  191 (424)
T TIGR01587       152 DEVHAYEEYTL---------ALTILAALEVLKIDNDVKILLMSATLPRE  191 (424)
T ss_pred             HHHHHHHHHHH---------HHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             53677764255---------55699999999987389889984056757