HHsearch alignment for GI: 254780332 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=95.89 E-value=0.038 Score=35.83 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=84.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC---CC-CCC
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011---00-012
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSS---KI-RRG 296 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~---~i-~~g 296 (504)
T Consensus 1 ~~v~~APTG~GKTe~aL~~A~~sah~~k~~---------~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~s 71 (424)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALKSAHLIKKQ---------KADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHS 71 (424)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHH---------HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 968861789987899999998636664224---------44010122026888999999999867754178543233455
Q ss_pred -CCCHHHH-------------HHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHH-----HCCC----CC--CCEEEE
Q ss_conf -1376889-------------9899999998627--807825899889999998864-----0224----44--746776
Q gi|254780332|r 297 -ELTRPDY-------------EKIVACSQVMQKL--PLYIDQTGGISMSQLATRARR-----LKRQ----RG--LDLLIV 349 (504)
Q Consensus 297 -~l~~~e~-------------~~i~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~-----~~~~----~g--i~~vvI 349 (504)
T Consensus 72 srfnh~~~~ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~ 151 (424)
T TIGR01587 72 SRFNHLASSIKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIF 151 (424)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 22678999999877630478279999998522421210131788534122000000553445205688887777676562
Q ss_pred CCHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCEEEEE-ECCCC
Q ss_conf 7135325664432113788999-99999999988279199977-13822
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITG-ITMALKALAKELNIPIIALS-QLSRQ 396 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~-is~~lK~lA~e~~ipvi~ls-QLnR~ 396 (504)
T Consensus 152 DE~h~y~~~~~---------~~~~l~~L~~~~~~~~~~~~lMsATlP~~ 191 (424)
T TIGR01587 152 DEVHAYEEYTL---------ALTILAALEVLKIDNDVKILLMSATLPRE 191 (424)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 53677764255---------55699999999987389889984056757