HHsearch alignment for GI: 254780332 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.22 E-value=2.6e-09 Score=90.32 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=131.6
Q ss_pred HHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 77655-64167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 209 LDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 209 LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
T Consensus 1 iD~LLgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~---------------~Gk~v~YiDTE---------------- 49 (223)
T TIGR02237 1 IDELLGGGVERGIITQIYGPPGSGKTNICLILAVNAAR---------------QGKKVVYIDTE---------------- 49 (223)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECC----------------
T ss_conf 95220585120358898758998678999999999986---------------18958999628----------------
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHH---HHHHHCCEEEECCCCCCHH-HHHHHHHHHCCCC--CCCEEEECCHH-HCCCCCC
Q ss_conf 10110001213768899899999---9986278078258998899-9999886402244--47467767135-3256644
Q gi|254780332|r 288 VPSSKIRRGELTRPDYEKIVACS---QVMQKLPLYIDQTGGISMS-QLATRARRLKRQR--GLDLLIVDYIQ-LMTTSKK 360 (504)
Q Consensus 288 I~~~~i~~g~l~~~e~~~i~~a~---~~l~~~~l~I~d~~~~ti~-~I~~~~r~~~~~~--gi~~vvIDYLq-li~~~~~ 360 (504)
T Consensus 50 --------GGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~ 121 (223)
T TIGR02237 50 --------GGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVAIQKTSKLIDRDGDKADLVVVDSFTALYRLERS 121 (223)
T ss_pred --------CCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCC
T ss_conf --------983289999986305889888841535523535678999999999998606883314888153345420257
Q ss_pred CCCHHHH-HHHHHHHH---HHHHHHHHCCCEEEEEECCCCCCC--CCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCC
Q ss_conf 3211378-89999999---999998827919997713822016--89999840101432422331387889725566164
Q gi|254780332|r 361 IEENRVL-EITGITMA---LKALAKELNIPIIALSQLSRQVEN--RDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIR 434 (504)
Q Consensus 361 ~~~~r~~-~i~~is~~---lK~lA~e~~ipvi~lsQLnR~~e~--r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~ 434 (504)
T Consensus 122 ~d~nk~~~~~~~l~~Ql~~Ll~lArk~~~AVviTNQvy~d~~~gG~~~~~P~-----GG~~L~h~~K~i~rLE~~---~- 192 (223)
T TIGR02237 122 DDRNKQISLNRELARQLTLLLSLARKKDLAVVITNQVYTDVNNGGSETLRPL-----GGHLLEHWSKVILRLEKL---N- 192 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEC-----CCHHHHHHHCEEEEEECC---C-
T ss_conf 8602567999999999999999987649978997115886377973201003-----311343110213356447---8-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE-EEEE
Q ss_conf 4233332221110000001123388389999740899725-9999
Q gi|254780332|r 435 NKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG-TVTL 478 (504)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g-~~~~ 478 (504)
T Consensus 193 --r--------------------~G~R~a~L~kHR~~~EG~~v~F 215 (223)
T TIGR02237 193 --R--------------------VGRRKATLEKHRSRKEGESVKF 215 (223)
T ss_pred --C--------------------CCCEEEEEEECCCCCCCCEEEE
T ss_conf --9--------------------8742456654055789975789