HHsearch alignment for GI: 254780332 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.80  E-value=0.0046  Score=42.76  Aligned_cols=87  Identities=23%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             301343367789999987411--2366443210137765564167--726776213100276999999999985101112
Q gi|254780332|r  176 HTFSDAMTVAIDMAGQAFNRD--GRLAGVSTGIQTLDKQMGGLQR--SDLIIIAGRPGMGKTSLATNIAYNVADAYKAEL  251 (504)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~--~~~~Gi~TG~~~LD~~~gGl~~--G~l~Viaarpg~GKTalalniA~~~A~~~~~~~  251 (504)
T Consensus       185 ~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE---~EleRtiQvLCRR~KNNPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe  261 (774)
T TIGR02639       185 KKQQDALEKYTVDLTEKAKNGKIDPLIGRE---DELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLAQRIAEGQKVPE  261 (774)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf             046569988415489998608878734566---88742333203456788720448886448999999998641564670


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCH
Q ss_conf             33333212479758999585217
Q gi|254780332|r  252 QTDGSYKTINGGIVGFYSLEMSS  274 (504)
Q Consensus       252 ~~~~~~~~~~g~~Vl~fSlEMs~  274 (504)
T Consensus       262 ~Lk---------n~~IY~LDmG~  275 (774)
T TIGR02639       262 VLK---------NAKIYSLDMGT  275 (774)
T ss_pred             HHC---------CCCEEEECHHH
T ss_conf             024---------78345404345