HHsearch alignment for GI: 254780332 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.80 E-value=0.0046 Score=42.76 Aligned_cols=87 Identities=23% Similarity=0.338 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 301343367789999987411--2366443210137765564167--726776213100276999999999985101112
Q gi|254780332|r 176 HTFSDAMTVAIDMAGQAFNRD--GRLAGVSTGIQTLDKQMGGLQR--SDLIIIAGRPGMGKTSLATNIAYNVADAYKAEL 251 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~--~~~~Gi~TG~~~LD~~~gGl~~--G~l~Viaarpg~GKTalalniA~~~A~~~~~~~ 251 (504)
T Consensus 185 ~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE---~EleRtiQvLCRR~KNNPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe 261 (774)
T TIGR02639 185 KKQQDALEKYTVDLTEKAKNGKIDPLIGRE---DELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLAQRIAEGQKVPE 261 (774)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 046569988415489998608878734566---88742333203456788720448886448999999998641564670
Q ss_pred CCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 33333212479758999585217
Q gi|254780332|r 252 QTDGSYKTINGGIVGFYSLEMSS 274 (504)
Q Consensus 252 ~~~~~~~~~~g~~Vl~fSlEMs~ 274 (504)
T Consensus 262 ~Lk---------n~~IY~LDmG~ 275 (774)
T TIGR02639 262 VLK---------NAKIYSLDMGT 275 (774)
T ss_pred HHC---------CCCEEEECHHH
T ss_conf 024---------78345404345