HHsearch alignment for GI: 254780332 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=94.27 E-value=0.26 Score=29.39 Aligned_cols=97 Identities=22% Similarity=0.323 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHHHH-HHH----CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 64432101377655-641----6772677621310027699999999998510111233333212479758999585217
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGL----QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS 274 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl----~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~ 274 (504)
T Consensus 103 ~~l~GGYKayR~~v~~~l~~~~~~~~~~vl~G~TG~GKT~iL~~L~~-------------------~G~qvi--DL---- 157 (311)
T TIGR03167 103 PRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALAN-------------------AGAQVL--DL---- 157 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH-------------------CCCCCC--CH----
T ss_conf 31578389999999999971454687699878888778999999997-------------------699742--58----
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHH-HCCEEEECCCC
Q ss_conf 9998789999874101100012137688998-999999986-27807825899
Q gi|254780332|r 275 EQLATRIISEQTEVPSSKIRRGELTRPDYEK-IVACSQVMQ-KLPLYIDQTGG 325 (504)
Q Consensus 275 ~el~~R~is~~s~I~~~~i~~g~l~~~e~~~-i~~a~~~l~-~~~l~I~d~~~ 325 (504)
T Consensus 158 EglAnHRGS~FG~~~~----~~QPsQk~FEn~l~~~l~~~~~~~~i~vE~ES~ 206 (311)
T TIGR03167 158 EGLANHRGSSFGALGL----GPQPSQKRFENALAEALRRLDPGRPIFVEDESR 206 (311)
T ss_pred HHHHHCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 9986314653468888----999789999999999998178889569960331