HHsearch alignment for GI: 254780332 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.79 E-value=0.097 Score=32.72 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHH-HC-CCCCCCCCCCHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 3433677899999874-11-23664432101377655641--67726776213100276999999999985101112333
Q gi|254780332|r 179 SDAMTVAIDMAGQAFN-RD-GRLAGVSTGIQTLDKQMGGL--QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD 254 (504)
Q Consensus 179 ~~~~~~~~~~~~~~~~-~~-~~~~Gi~TG~~~LD~~~gGl--~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~ 254 (504)
T Consensus 167 ~~~L~ky~~dLt~~A~~gklDPvIGRd---~EI~r~iqIL~Rr~KNNPiLVGepGVGKTAIvEGLA~rI~~g~-VP~--- 239 (852)
T TIGR03345 167 TSALDQYTTDLTAQAREGKIDPVLGRD---DEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGD-VPP--- 239 (852)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCC-CCH---
T ss_conf 448999978899999839999886949---9999999999862479974657999879999999999997699-986---
Q ss_pred CCCCCCCCCEEEEEECCCCHH--------HHHHHHHHHHHH
Q ss_conf 332124797589995852179--------998789999874
Q gi|254780332|r 255 GSYKTINGGIVGFYSLEMSSE--------QLATRIISEQTE 287 (504)
Q Consensus 255 ~~~~~~~g~~Vl~fSlEMs~~--------el~~R~is~~s~ 287 (504)
T Consensus 240 ----~L--~~~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~e 274 (852)
T TIGR03345 240 ----AL--RNVRLLSLDLGLLQAGASVKGEFENRLKSVIDE 274 (852)
T ss_pred ----HH--HCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf ----77--438567867888864035763599999999999