HHsearch alignment for GI: 254780332 and conserved domain: TIGR03499

Probab=97.56  E-value=0.00093  Score=48.07  Aligned_cols=87  Identities=22%  Similarity=0.366  Sum_probs=52.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r  218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE  297 (504)
Q Consensus       218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~  297 (504)
T Consensus       193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~-------------~~~~~V~lIT~Dt------yRigA--------------  239 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLE-------------HGKKKVALITTDT------YRIGA--------------  239 (282)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHH-------------CCCCCEEEEEECC------CCHHH--------------
T ss_conf             67279997788875788999999999997-------------3899679998077------76789--------------


Q ss_pred             CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf             37688998999999986278078258998899999988640224447467767
Q gi|254780332|r  298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVD  350 (504)
Q Consensus       298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvID  350 (504)
T Consensus       240 -----~eQLk~ya-~il~vp~~vv~----~~~~l~~~l~~~~---~~d~IlID  279 (282)
T TIGR03499       240 -----VEQLKTYA-KILGVPVKVAR----DPKELAKALERLR---DKDLILID  279 (282)
T ss_pred             -----HHHHHHHH-HHHCCEEEEEC----CHHHHHHHHHHCC---CCCEEEEE
T ss_conf             -----99999999-99597489939----9999999998657---98999981