HHsearch alignment for GI: 254780332 and conserved domain: TIGR03608
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.12 E-value=0.013 Score=39.29 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=77.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC---CCHHHHHH--H-H
Q ss_conf 3776556416772677621310027699999999998510111233333212479758999585---21799987--8-9
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE---MSSEQLAT--R-I 281 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE---Ms~~el~~--R-~ 281 (504)
T Consensus 13 vL~~vsl~i~~Ge~~~i~GpSGsGKSTL-L~~i~gl~~--------------p~sG~i~~~g~~~~~~~~~~~~~~rr~~ 77 (206)
T TIGR03608 13 ILDDLNLTIEKGKMVAIVGESGSGKSTL-LNIIGLLEK--------------PDSGQVYLNGQETPPINSKKASKFRREK 77 (206)
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHH-HHHHHCCCC--------------CCCEEEEECCEECCCCCHHHHHHHHHCC
T ss_conf 9758077986998999987999709999-999975999--------------8975999999999989988999998658
Q ss_pred H-------------HHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCEEE--ECCC-CCCHH--HHHHHHHHHCCCC
Q ss_conf 9-------------9987410110001213768-8998999999986278078--2589-98899--9999886402244
Q gi|254780332|r 282 I-------------SEQTEVPSSKIRRGELTRP-DYEKIVACSQVMQKLPLYI--DQTG-GISMS--QLATRARRLKRQR 342 (504)
Q Consensus 282 i-------------s~~s~I~~~~i~~g~l~~~-e~~~i~~a~~~l~~~~l~I--~d~~-~~ti~--~I~~~~r~~~~~~ 342 (504)
T Consensus 78 iG~VfQ~~~L~~~ltV~eNi~l~l~~~~-~~~~~~~~~~~~~L~~---vgl~~~~~~~p~~LSGGe~QRVAIARAL~--~ 151 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLALKYSK-LSKKEKREKKKEALEK---VGLNLKLKQKIYELSGGEQQRVALARAIL--K 151 (206)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH---CCCCHHHHCCCHHCCHHHHHHHHHHHHHH--C
T ss_conf 8998579876798919999999998659-9999999999999998---69905652992444869999999999982--4
Q ss_pred CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 47467767135325664432113788999999999999882791999771
Q gi|254780332|r 343 GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 343 gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
T Consensus 152 ~P~illaD-----EPT~~L-D~--~~~~~i~~ll~~l~~~-g~tii~vTH 192 (206)
T TIGR03608 152 PSELILAD-----EPTGSL-DP--KNRDEVLDLLLELNDE-GKTIIIVTH 192 (206)
T ss_pred CCCEEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHC-CCEEEEECC
T ss_conf 99999963-----998778-99--9999999999999867-999999898