HHsearch alignment for GI: 254780332 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0089 Score=40.62 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC---HHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958521---79998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS---SEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs---~~el~~R~is~ 284 (504)
T Consensus 14 ~l~~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~---------------~~~~G~i~~~g~~~~~~~~~~~~~-~i~~ 77 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL---------------KPTSGEILIDGKDIAKLPLEELRR-RIGY 77 (157)
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC---------------CCCCCEEEECCEECCCCCHHHHHH-CCCC
T ss_conf 782117898799799998788999899999995884---------------799628999999999799999994-0608
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 87410110001213768899899999998627807825899
Q gi|254780332|r 285 QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGG 325 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~ 325 (504)
T Consensus 78 ----------v~QLSgGqkqrv~iA~al~~~p~ililDEPt 108 (157)
T cd00267 78 ----------VPQLSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf ----------7668869999999999997099999996987