HHsearch alignment for GI: 254780332 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.37 E-value=2.8e-10 Score=97.78 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=140.5
Q ss_pred CCCCCCCCHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 664432101377655--641677267762131002769999999999851011123333321247975899958521799
Q gi|254780332|r 199 LAGVSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQ 276 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~--gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~e 276 (504)
T Consensus 33 ~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk---------------~gg~~~~iDaE~a~d~ 97 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK---------------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEHHHCCCH
T ss_conf 5346268199999975899668808999889877799999999999873---------------5983999962542598
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCC
Q ss_conf 98789999874101100012137688998999999986278078258998899999988640224447467767135325
Q gi|254780332|r 277 LATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 277 l~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~ 356 (504)
T Consensus 98 ---~~a~-~lGVD~~~l~-------------------------~~-qp~-~~Eq~l~i~~~li~s~~~dliViDSvaal~ 146 (325)
T cd00983 98 ---VYAK-KLGVDLDNLL-------------------------IS-QPD-TGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred ---HHHH-HCCCCHHHEE-------------------------EE-CCC-HHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf ---9999-8099846758-------------------------96-663-899999999997515887679981511236
Q ss_pred CCCCC----CC----HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 66443----21----13788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 357 TSKKI----EE----NRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 357 ~~~~~----~~----~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 147 p~~E~e~~~~d~~vg~~ArlmskalRklt~~l~k~~~~lIfiNQ~R~kiG~m-fg~pe~t--~GG~Alkf~aSvrl~l~k 223 (325)
T cd00983 147 PKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVM-FGNPETT--TGGNALKFYSSVRLDIRR 223 (325)
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCC-CCCCCCC--CCCCCHHCCCEEEEEEEE
T ss_conf 5788760113211438999999999999987533780799955432215775-6898537--997505512113899976
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE---EEEEEEECCCCCEEEC
Q ss_conf 5661644233332221110000001123388389999740899725---9999974685402007
Q gi|254780332|r 429 DEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG---TVTLAFQAEFTRFSAL 490 (504)
Q Consensus 429 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g---~~~~~f~~~~~~f~~~ 490 (504)
T Consensus 224 ~~~-------ik~-----------~~~~iG~~ikvkv~KnK~a~P~r~a~~~i~yg~GId~~~el 270 (325)
T cd00983 224 IET-------IKD-----------GDEVIGNRTKVKVVKNKVAPPFKTAEFDILFGEGISREGEI 270 (325)
T ss_pred CCC-------CCC-----------CCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 131-------257-----------88507769999999788689986799994678763425329