HHsearch alignment for GI: 254780332 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=100.00 E-value=0 Score=462.42 Aligned_cols=258 Identities=24% Similarity=0.317 Sum_probs=224.6
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 11236644321013776556416772677621310027699999999998510111233333212479758999585217
Q gi|254780332|r 195 RDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS 274 (504)
Q Consensus 195 ~~~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~ 274 (504)
T Consensus 6 ~~~~~~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~--------------~g~~vl~~SlEm~~ 71 (271)
T cd01122 6 EALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------------HGVRVGTISLEEPV 71 (271)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCEEEEEECCCCH
T ss_conf 7887556658816688873799998089999689986999999999999997--------------69908999704999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-EEEECC-CCCCHHHHHHHHHHHCCCCCCCEEEECCH
Q ss_conf 9998789999874101100012137688998999999986278-078258-99889999998864022444746776713
Q gi|254780332|r 275 EQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLP-LYIDQT-GGISMSQLATRARRLKRQRGLDLLIVDYI 352 (504)
Q Consensus 275 ~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~-l~I~d~-~~~ti~~I~~~~r~~~~~~gi~~vvIDYL 352 (504)
T Consensus 72 ~~~~~Rlls~~~g~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDyl 149 (271)
T cd01122 72 VRTARRLLGQYAGKRLHLPDTVFIY--TLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNL 149 (271)
T ss_pred HHHHHHHHHHHHCCCHHHCCCCCCC--HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 9999999999829971103446778--09999999999707998088789999889999999999998289988998317
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CCCCCCCCCCCCCHHHHHCCEEEEEECH
Q ss_conf 5325664432113788999999999999882791999771382201689---9998401014324223313878897255
Q gi|254780332|r 353 QLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRD---NKRPQLSDLRESGSIEQDADVVLFVIRD 429 (504)
Q Consensus 353 qli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~---~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 429 (504)
T Consensus 150 qll~~~~~~~~d~~~~i~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l~R~ 229 (271)
T cd01122 150 SIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERN 229 (271)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEEEEC
T ss_conf 85036786773189999999999999999979977999526765355565668775666612430125328799999755
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEE-EEEEECCCCCEEE
Q ss_conf 6616442333322211100000011233883899997408-9972599-9997468540200
Q gi|254780332|r 430 EYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQR-HGPTGTV-TLAFQAEFTRFSA 489 (504)
Q Consensus 430 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR-~G~~g~~-~~~f~~~~~~f~~ 489 (504)
T Consensus 230 ~~~~~~---------------------~~~~~~l~v~KnR~~G~tG~~~~l~y~~~tgr~s~ 270 (271)
T cd01122 230 QQAELD---------------------ERNTTYLRILKNRFTGGTGVAGPLEYDKETGRLSP 270 (271)
T ss_pred CCCCCC---------------------CCCEEEEEEEECCCCCCCCCEEEEEEECCCCEECC
T ss_conf 766667---------------------89828999993689899988898899689726697