HHsearch alignment for GI: 254780332 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.77 E-value=2e-16 Score=144.55 Aligned_cols=213 Identities=19% Similarity=0.271 Sum_probs=141.3
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~---------~~g~~~~vvyIdtE~~f~--~~R 69 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIE---------LGGLEGKAVYIDTEGTFR--PER 69 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH---------HCCCCCEEEEEECCCCCC--HHH
T ss_conf 988857899650799647879999999998499999999999842475---------367896299995367758--899
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH----HHHCCCCCCCEEEECCHHHC-
Q ss_conf 9999874101100012137688998999999986278078258998899999988----64022444746776713532-
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRA----RRLKRQRGLDLLIVDYIQLM- 355 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~----r~~~~~~gi~~vvIDYLqli- 355 (504)
T Consensus 70 l~qia~~~-------~-~~~----------~~~l-~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia~l~ 128 (235)
T cd01123 70 LVQIAERF-------G-LDP----------EEVL-DNIYVARAY--NSDHQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred HHHHHHHH-------C-CCH----------HHHH-CCEEEECCC--CHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHH
T ss_conf 99999971-------3-472----------4542-254796379--9999999999999987303772399996104555
Q ss_pred CC---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCC---CCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 56---644321137889999999999998827919997713822016--899---9984010143242233138788972
Q gi|254780332|r 356 TT---SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN--RDN---KRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 356 ~~---~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~--r~~---krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 129 r~e~~~~~~~~~r~~~l~~~~~~L~~lA~~~~~aVvvtNqvt~~~~~~~~~~~~~~~pal-----G~~w~h~v~~rl~l~ 203 (235)
T cd01123 129 RAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARPDGAAMFGGDPKKPAG-----GNIWAHASTTRLYLR 203 (235)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCCCCCCCCCCCCCC-----HHHHHHHCCEEEEEE
T ss_conf 666448864478999999999999999998097999968065506764245788643450-----266785385999999
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 556616442333322211100000011233883899997408997259999
Q gi|254780332|r 428 RDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTL 478 (504)
Q Consensus 428 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~ 478 (504)
T Consensus 204 ~~~-----~----------------------~~R~l~v~ks~~~p~~~~~f 227 (235)
T cd01123 204 KGR-----G----------------------EERIAKIVDSPHLPEGEAVF 227 (235)
T ss_pred ECC-----C----------------------CEEEEEEEECCCCCCEEEEE
T ss_conf 479-----9----------------------71899998689999817999