HHsearch alignment for GI: 254780332 and conserved domain: cd01133

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.37  E-value=0.031  Score=36.46  Aligned_cols=44  Identities=32%  Similarity=0.461  Sum_probs=35.9

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             432101377655641677267762131002769999999999851
Q gi|254780332|r  202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA  246 (504)
Q Consensus       202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~  246 (504)
T Consensus        53 l~TGIr~ID~l~p-igkGQR~~I~~~~g~GKt~ll~~ii~~~~~~   96 (274)
T cd01133          53 LETGIKVIDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNIAKA   96 (274)
T ss_pred             CCCCCEEEECCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             1158666644466-1478577875799998236899999999850