HHsearch alignment for GI: 254780332 and conserved domain: cd01135
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.96 E-value=0.071 Score=33.75 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 432101377655641677267762131002769999999999851
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
T Consensus 53 l~TGIkaID~l~p-ig~GQR~gIfgg~GvGKs~L~~~i~~~~~~~ 96 (276)
T cd01135 53 IQTGISAIDGMNT-LVRGQKIPIFSGSGLPHNELAAQIARQAGVV 96 (276)
T ss_pred CCCCCEEEECCCC-CCCCCEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 2258535405467-2367663320578863678999999987751