HHsearch alignment for GI: 254780332 and conserved domain: cd01393

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.56  E-value=1.3e-12  Score=115.49  Aligned_cols=215  Identities=19%  Similarity=0.236  Sum_probs=137.9

Q ss_pred             CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r  202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR  280 (504)
Q Consensus       202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R  280 (504)
T Consensus         1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~---------~~~~g~vvyIDtE~~f~--~~r   69 (226)
T cd01393           1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGEL---------GGLEGKVVYIDTEGAFR--PER   69 (226)
T ss_pred             CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC---------CCCCCEEEEEECCCCCC--HHH
T ss_conf             9887478998857998888399999999998999999999998542211---------69996199995577531--999


Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH---HHCCCCCCCEEEECCHHHCCC
Q ss_conf             99998741011000121376889989999999862780782589988999999886---402244474677671353256
Q gi|254780332|r  281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRAR---RLKRQRGLDLLIVDYIQLMTT  357 (504)
Q Consensus       281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r---~~~~~~gi~~vvIDYLqli~~  357 (504)
T Consensus        70 l~~i~~~~~--------~~~---------~~~l--~~i~~~~~~--~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~r  128 (226)
T cd01393          70 LVQLAVRFG--------LDP---------EEVL--DNIYVARPY--NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR  128 (226)
T ss_pred             HHHHHHHHC--------CCH---------HHHH--HHEEEECCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECC
T ss_conf             999987603--------266---------7764--333684379--9999999999999875247842899932200111


Q ss_pred             CC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHCCEEEEEECHHH
Q ss_conf             64----43211378899999999999988279199977138220168--9999840101432422331387889725566
Q gi|254780332|r  358 SK----KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR--DNKRPQLSDLRESGSIEQDADVVLFVIRDEY  431 (504)
Q Consensus       358 ~~----~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r--~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~  431 (504)
T Consensus       129 ~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avv~tNQv~~~i~~~~~~~~~p~-----gG~~w~~~~~~Ri~l~k~~~  203 (226)
T cd01393         129 KEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMFGDPETPA-----GGNALAHASTTRLDLRKGRG  203 (226)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEECCCCCCCCCCCCC-----CHHHHHHHCEEEEEEEECCC
T ss_conf             4442762078999999999999999999849799996811781578789988787-----63664600269999996688


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE
Q ss_conf             1644233332221110000001123388389999740899725999
Q gi|254780332|r  432 YIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVT  477 (504)
Q Consensus       432 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~  477 (504)
T Consensus       204 ----~--------------------~~~~r~~~~~k~p~~p~~~~~  225 (226)
T cd01393         204 ----I--------------------IGERRIAKVVKSPALPEAEAE  225 (226)
T ss_pred             ----C--------------------CCCEEEEEEEECCCCCCCCCC
T ss_conf             ----8--------------------788799999989899876687