HHsearch alignment for GI: 254780332 and conserved domain: cd03111

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

Probab=94.40  E-value=0.08  Score=33.33  Aligned_cols=40  Identities=30%  Similarity=0.476  Sum_probs=32.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf             677621310027699999999998510111233333212479758999585217
Q gi|254780332|r  221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS  274 (504)
Q Consensus       221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~  274 (504)
T Consensus         2 i~~~~~kGGvG~Tt~A~nlA~~la~~--------------~~~~v~lvDldlqf   41 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKE--------------AGRRVLLVDLDLQF   41 (106)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEECCCCC
T ss_conf             89972899866899999999999984--------------19938999654677