HHsearch alignment for GI: 254780332 and conserved domain: cd03112
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.92 E-value=0.076 Score=33.51 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=63.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC----
Q ss_conf 6776213100276999999999985101112333332124797589995852179998789999874101100012----
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRG---- 296 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g---- 296 (504)
T Consensus 2 v~iitGFLGaGKTTll~~lL~~-----------------~~~~~~avIvNEfG~~~ID~~ll~~-~~~~v~el~~GCiCC 63 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE-----------------QHGRKIAVIENEFGEVGIDNQLVVD-TDEEIIEMNNGCICC 63 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHHC-----------------CCCCCEEEEEECCCCCCCCHHHHHC-CCCEEEEECCCEEEE
T ss_conf 0899848889999999999847-----------------8899779997076554631667637-882499933871465
Q ss_pred CCCHHHHHHHHHHHHHHHHC-----CEEEECCCCCCHHHHHHHH---HHHCCCCCCC--EEEECCHHHC
Q ss_conf 13768899899999998627-----8078258998899999988---6402244474--6776713532
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKL-----PLYIDQTGGISMSQLATRA---RRLKRQRGLD--LLIVDYIQLM 355 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~-----~l~I~d~~~~ti~~I~~~~---r~~~~~~gi~--~vvIDYLqli 355 (504)
T Consensus 64 s~~~dl~~~l~~l~~~~~~~~~~~d~iiIE~SGla~P~~i~~~~~~~~~l~~~~~l~~vi~vVDa~~~~ 132 (158)
T cd03112 64 TVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHAN 132 (158)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCHHHHCEEECCCEEEEECHHHHH
T ss_conf 225158999999999765157887889996368788289999886071432107438769998189877