>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

Probab=95.56 E-value=0.02 Score=37.99 Aligned_cols=162 Identities=18% Similarity=0.212 Sum_probs=81.7 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874 Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504) Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504) T Consensus 15 aL~~vsl~v~~GEi~~liG~nGaGKSTll~~l~G~~-~--------------p~~G~I~~~G~~~~~~~~~~~~~~~i~~ 79 (182) T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-P--------------PASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182) T ss_pred CEECEEEEECCCCEEEEECCCCCCCCHHHHHHCCCC-C--------------CCCCEEEECCEECCCCCHHHHHHCCEEE T ss_conf 762317898599699998889999263778766986-7--------------8877599999998864999999789699 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHH Q ss_conf 1011000121376889989999999862780782589988999--99988640224447467767135325664432113 Q gi|254780332|r 288 VPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENR 365 (504) Q Consensus 288 I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r 365 (504) T Consensus 80 vp~~r~~~~l~~~~~---v~------en~~--~--~~~LSGG~~Qrv~lAral~--~~p~llllD-----EPT~gL-D-- 136 (182) T cd03215 80 VPEDRKREGLVLDLS---VA------ENIA--L--SSLLSGGNQQKVVLARWLA--RDPRVLILD-----EPTRGV-D-- 136 (182) T ss_pred EEHHHHHCCCCCCCC---HH------HHHH--C--CCCCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCCCC-C-- T ss_conf 602076625678990---99------9951--8--5579989999999999997--199999986-----875458-9-- Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE Q ss_conf 78899999999999988279199977138220168999984010143242233138788972 Q gi|254780332|r 366 VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504) Q Consensus 366 ~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504) T Consensus 137 ~~~~~~i~~~i~~l~~~-g~tvi~isHd-------------------l~~~~~~~Drv~vl~ 178 (182) T cd03215 137 VGAKAEIYRLIRELADA-GKAVLLISSE-------------------LDELLGLCDRILVMY 178 (182) T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEECC-------------------HHHHHHHCCEEEEEC T ss_conf 99999999999999978-9999999687-------------------999999799999983

HHsearch alignment for GI: 254780332 and conserved domain: cd03215