HHsearch alignment for GI: 254780332 and conserved domain: cd03218
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.76 E-value=0.038 Score=35.80 Aligned_cols=175 Identities=13% Similarity=0.186 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
T Consensus 13 ~~~l~~vs~~v~~Gei~~llGpNGAGKSTll~~i~-Gl~~p--------------~~G~I~~~g~di~~~~~~~r~r~gi 77 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV-GLVKP--------------DSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCCE
T ss_conf 99882606798999599999999961999999997-79999--------------8629999999999999999997197
Q ss_pred HHHCCCCCCCC---------------CCCHHH-HHHHHHHHHHHHHCCEEE-ECC--CCCCHH--HHHHHHHHHCCCCCC
Q ss_conf 74101100012---------------137688-998999999986278078-258--998899--999988640224447
Q gi|254780332|r 286 TEVPSSKIRRG---------------ELTRPD-YEKIVACSQVMQKLPLYI-DQT--GGISMS--QLATRARRLKRQRGL 344 (504)
Q Consensus 286 s~I~~~~i~~g---------------~l~~~e-~~~i~~a~~~l~~~~l~I-~d~--~~~ti~--~I~~~~r~~~~~~gi 344 (504)
T Consensus 78 g~~pQ~~~l~~~ltV~enl~~~~~~~~~~~~~~~~~~~~~l---~~~~L~~~~~~~~~~LSgG~~qrv~iAraL~--~~P 152 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL---EEFHITHLRKSKASSLSGGERRRVEIARALA--TNP 152 (232)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHCCCCHHHCCCHHHCCHHHHHHHHHHHHHH--CCC
T ss_conf 98777776788888999999999972999999999999999---8769824653942559999999999999996--699
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
T Consensus 153 ~illlD-----EPt~G-LD--p~~~~~i~~~i~~l~-~~g~tili~tH----------------~l---~~~~~~~drv~ 204 (232)
T cd03218 153 KFLLLD-----EPFAG-VD--PIAVQDIQKIIKILK-DRGIGVLITDH----------------NV---RETLSITDRAY 204 (232)
T ss_pred CEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHH-HCCCEEEEEEC----------------CH---HHHHHHCCEEE
T ss_conf 999988-----98568-89--999999999999999-58999999928----------------39---99998699999
Q ss_pred EEEC
Q ss_conf 9725
Q gi|254780332|r 425 FVIR 428 (504)
Q Consensus 425 ~l~R 428 (504)
T Consensus 205 vl~~ 208 (232)
T cd03218 205 IIYE 208 (232)
T ss_pred EEEC
T ss_conf 9979