HHsearch alignment for GI: 254780332 and conserved domain: cd03218

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.76  E-value=0.038  Score=35.80  Aligned_cols=175  Identities=13%  Similarity=0.186  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r  206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ  285 (504)
Q Consensus       206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~  285 (504)
T Consensus        13 ~~~l~~vs~~v~~Gei~~llGpNGAGKSTll~~i~-Gl~~p--------------~~G~I~~~g~di~~~~~~~r~r~gi   77 (232)
T cd03218          13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV-GLVKP--------------DSGKILLDGQDITKLPMHKRARLGI   77 (232)
T ss_pred             EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCCE
T ss_conf             99882606798999599999999961999999997-79999--------------8629999999999999999997197


Q ss_pred             HHHCCCCCCCC---------------CCCHHH-HHHHHHHHHHHHHCCEEE-ECC--CCCCHH--HHHHHHHHHCCCCCC
Q ss_conf             74101100012---------------137688-998999999986278078-258--998899--999988640224447
Q gi|254780332|r  286 TEVPSSKIRRG---------------ELTRPD-YEKIVACSQVMQKLPLYI-DQT--GGISMS--QLATRARRLKRQRGL  344 (504)
Q Consensus       286 s~I~~~~i~~g---------------~l~~~e-~~~i~~a~~~l~~~~l~I-~d~--~~~ti~--~I~~~~r~~~~~~gi  344 (504)
T Consensus        78 g~~pQ~~~l~~~ltV~enl~~~~~~~~~~~~~~~~~~~~~l---~~~~L~~~~~~~~~~LSgG~~qrv~iAraL~--~~P  152 (232)
T cd03218          78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL---EEFHITHLRKSKASSLSGGERRRVEIARALA--TNP  152 (232)
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHCCCCHHHCCCHHHCCHHHHHHHHHHHHHH--CCC
T ss_conf             98777776788888999999999972999999999999999---8769824653942559999999999999996--699


Q ss_pred             CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf             46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r  345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL  424 (504)
Q Consensus       345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~  424 (504)
T Consensus       153 ~illlD-----EPt~G-LD--p~~~~~i~~~i~~l~-~~g~tili~tH----------------~l---~~~~~~~drv~  204 (232)
T cd03218         153 KFLLLD-----EPFAG-VD--PIAVQDIQKIIKILK-DRGIGVLITDH----------------NV---RETLSITDRAY  204 (232)
T ss_pred             CEEEEC-----CCCCC-CC--HHHHHHHHHHHHHHH-HCCCEEEEEEC----------------CH---HHHHHHCCEEE
T ss_conf             999988-----98568-89--999999999999999-58999999928----------------39---99998699999


Q ss_pred             EEEC
Q ss_conf             9725
Q gi|254780332|r  425 FVIR  428 (504)
Q Consensus       425 ~l~R  428 (504)
T Consensus       205 vl~~  208 (232)
T cd03218         205 IIYE  208 (232)
T ss_pred             EEEC
T ss_conf             9979