HHsearch alignment for GI: 254780332 and conserved domain: cd03219

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.25  E-value=0.065  Score=34.03  Aligned_cols=175  Identities=20%  Similarity=0.229  Sum_probs=87.4

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHH
Q ss_conf             0137765564167726776213100276999999999985101112333332124797589995852---1799987899
Q gi|254780332|r  206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRII  282 (504)
Q Consensus       206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~i  282 (504)
T Consensus        13 ~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~-Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~~~gi   77 (236)
T cd03219          13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS-GFLRP--------------TSGSVLFDGEDITGLPPHEIARLGI   77 (236)
T ss_pred             EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHHHHCCC
T ss_conf             99872338998899899999899973999999996-79878--------------8318999999668899999997597


Q ss_pred             HHH---H----------HHCC---------CCCCCCCCCHH-HHHHHHHHHHHHHHCCEE--EECC-CCCCHHH--HHHH
Q ss_conf             998---7----------4101---------10001213768-899899999998627807--8258-9988999--9998
Q gi|254780332|r  283 SEQ---T----------EVPS---------SKIRRGELTRP-DYEKIVACSQVMQKLPLY--IDQT-GGISMSQ--LATR  334 (504)
Q Consensus       283 s~~---s----------~I~~---------~~i~~g~l~~~-e~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~--I~~~  334 (504)
T Consensus        78 ~~v~Q~~~l~~~ltv~enl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LSGG~~Qrv~i  154 (236)
T cd03219          78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV---GLADLADRPAGELSYGQQRRLEI  154 (236)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHC---CCCCHHCCCHHHCCHHHHHHHHH
T ss_conf             676014102655438998988887604543001102358999999999999974---99804388626699999999999


Q ss_pred             HHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86402244474677671353256644321137889999999999998827919997713822016899998401014324
Q gi|254780332|r  335 ARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESG  414 (504)
Q Consensus       335 ~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg  414 (504)
T Consensus       155 Aral~--~~P~lliLD-----EPT~g-LD--~~~~~~i~~~l~~l~~-~G~tii~vsH----------------dl---~  204 (236)
T cd03219         155 ARALA--TDPKLLLLD-----EPAAG-LN--PEETEELAELIRELRE-RGITVLLVEH----------------DM---D  204 (236)
T ss_pred             HHHHH--CCCCEEEEE-----CCCCC-CC--HHHHHHHHHHHHHHHH-CCCEEEEECC----------------CH---H
T ss_conf             99996--599999994-----87658-99--9999999999999996-5999999917----------------48---9


Q ss_pred             HHHHHCCEEEEEEC
Q ss_conf             22331387889725
Q gi|254780332|r  415 SIEQDADVVLFVIR  428 (504)
Q Consensus       415 ~IEqdAD~v~~l~R  428 (504)
T Consensus       205 ~~~~~~Drv~vm~~  218 (236)
T cd03219         205 VVMSLADRVTVLDQ  218 (236)
T ss_pred             HHHHHCCEEEEEEC
T ss_conf             99996999999989