HHsearch alignment for GI: 254780332 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.92 E-value=0.0062 Score=41.82 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995852179998789999
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE 284 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~ 284 (504)
T Consensus 34 ~~~AL~~isf~i~~GeivgilG~NGaGKSTLl~~i-~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~p~ltv~enl-~~~~~ 110 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL-AGIYPPDSGTVTVRGRVSSLLGLGG-GFNPELTGRENI-YLNGR 110 (224)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCCEEEECCEECCCCCCCE-ECCCCCCHHHHH-HHHHH
T ss_conf 96987670789838989999979998199999999-7587778776999989843015742-039988299999-99999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CCCCHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCC
Q ss_conf 874101100012137688998999999986278078258-998899999--98864022444746776713532566443
Q gi|254780332|r 285 QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GGISMSQLA--TRARRLKRQRGLDLLIVDYIQLMTTSKKI 361 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLqli~~~~~~ 361 (504)
T Consensus 111 ~~g~~~~~~---------~~~~~~~l~-~~~L~~~~~~~~~~LSgG~kqRl~iA~al~--~~P~illLD-----EPt~-g 172 (224)
T cd03220 111 LLGLSRKEI---------DEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAFAIATA--LEPDILLID-----EVLA-V 172 (224)
T ss_pred HCCCCHHHH---------HHHHHHHHH-HHCCHHHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCC-C
T ss_conf 829658999---------999999998-636755653866546999999999999996--699999991-----8866-5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 2113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 362 EENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 362 ~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 173 LD~--~~~~~i~~~i~~l~~~-g~tiii~sH~-------------------l~~v~~lcdriivl~~ 217 (224)
T cd03220 173 GDA--AFQEKCQRRLRELLKQ-GKTVILVSHD-------------------PSSIKRLCDRALVLEK 217 (224)
T ss_pred CCH--HHHHHHHHHHHHHHHC-CCEEEEECCC-------------------HHHHHHHCCEEEEEEC
T ss_conf 699--9999999999999858-9999998898-------------------8999996999999989