HHsearch alignment for GI: 254780332 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.68 E-value=0.025 Score=37.17 Aligned_cols=178 Identities=20% Similarity=0.231 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHHH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852---1799987899
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLATRII 282 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~~R~i 282 (504)
T Consensus 13 ~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~-Gl~~--------------p~~G~I~~~G~~i~~~~~~~~~~~gi 77 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM-GLLP--------------PRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCC--------------CCCEEEEECCEECCCCCHHHHHHCCE
T ss_conf 99981408998899899999999985999999997-7988--------------99609999999999999999997593
Q ss_pred HHHHH---H-CC----CCCCCC---CCCHHHHHHHHHHHHHHHHCCEEEEC-CCCCCHHHH--HHHHHHHCCCCCCCEEE
Q ss_conf 99874---1-01----100012---13768899899999998627807825-899889999--99886402244474677
Q gi|254780332|r 283 SEQTE---V-PS----SKIRRG---ELTRPDYEKIVACSQVMQKLPLYIDQ-TGGISMSQL--ATRARRLKRQRGLDLLI 348 (504)
Q Consensus 283 s~~s~---I-~~----~~i~~g---~l~~~e~~~i~~a~~~l~~~~l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~~vv 348 (504)
T Consensus 78 ~~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~--~~P~lll 155 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM--SRPKLLL 155 (222)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEE
T ss_conf 89635665688990999999987635813599999999988663799874845448999999999999996--4999999
Q ss_pred ECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 67135325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 349 VDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 349 IDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 156 LD-----EPt~g-LD--~~~~~~i~~~l~~l~~-~g~tii~vtH----------------d---l~~~~~~~Drv~vl~~ 207 (222)
T cd03224 156 LD-----EPSEG-LA--PKIVEEIFEAIRELRD-EGVTILLVEQ----------------N---ARFALEIADRAYVLER 207 (222)
T ss_pred EE-----CCCCC-CC--HHHHHHHHHHHHHHHH-CCCEEEEECC----------------C---HHHHHHHCCEEEEEEC
T ss_conf 93-----86547-99--9999999999999995-6999999908----------------5---8999996999999979