>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.31 E-value=0.02 Score=37.96 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=77.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999987 Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQT 286 (504) Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s 286 (504) T Consensus 14 ~~l~~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~-Gl~~p--------------~~G~I~~~g~~i~~~~~~~~~~r--r 76 (178) T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA-GLEEP--------------DSGSILIDGEDLTDLEDELPPLR--R 76 (178) T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCCHHHHHC--C T ss_conf 9983707698899899999999983999999998-59999--------------96399999999988861024541--7 Q ss_pred HHCCCCCCCCCCCHH--HHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCH Q ss_conf 410110001213768--899899999998627807825899889999998864022444746776713532566443211 Q gi|254780332|r 287 EVPSSKIRRGELTRP--DYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEEN 364 (504) Q Consensus 287 ~I~~~~i~~g~l~~~--e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~ 364 (504) T Consensus 77 ~ig-~vFQ~~~L~p~~tv~eNv~~--------~L-----SG-Gq~QRvaIARAL~--~~P~ill~D-----EPts~L-D- 132 (178) T cd03229 77 RIG-MVFQDFALFPHLTVLENIAL--------GL-----SG-GQQQRVALARALA--MDPDVLLLD-----EPTSAL-D- 132 (178) T ss_pred CEE-EEECCCCCCCCCCHHHHHCE--------EC-----CC-HHHHHHHHHHHHH--CCCCEEEEE-----CCCCCC-C- T ss_conf 759-99269988998928996008--------17-----72-6889999999985--299999970-----897647-9- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE Q ss_conf 378899999999999988279199977138220168999984010143242233138788972 Q gi|254780332|r 365 RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504) Q Consensus 365 r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504) T Consensus 133 -~~~~~~i~~~l~~l~~~~~~t~i~vTH----------------d---~~~a~~~aDri~vm~ 175 (178) T cd03229 133 -PITRREVRALLKSLQAQLGITVVLVTH----------------D---LDEAARLADRVVVLR 175 (178) T ss_pred -HHHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEE T ss_conf -999999999999999964999999989----------------9---999998699999992

HHsearch alignment for GI: 254780332 and conserved domain: cd03229