>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.74 E-value=0.021 Score=37.83 Aligned_cols=162 Identities=23% Similarity=0.243 Sum_probs=81.1 Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998 Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504) Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504) T Consensus 20 ~~vL~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g---~~--~~-------~~~~-G~i~~~g~~~~~--~~~~~ig-- 82 (192) T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG---RK--TA-------GVIT-GEILINGRPLDK--NFQRSTG-- 82 (192) T ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHC---CC--CC-------CCEE-EEEEECCEECCH--HHHHHEE-- T ss_conf 799988388992883999999999988999999837---98--78-------8317-899987827667--7562279-- Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCC Q ss_conf 7410110001213768899899999998627807825899889999--99886402244474677671353256644321 Q gi|254780332|r 286 TEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEE 363 (504) Q Consensus 286 s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~ 363 (504) T Consensus 83 -yv~q~~~~~~~~tv~e~l~~~---~~l----------~~LS~gqrqrv~iA~aL~--~~P~lllLD-----EPt~g-LD 140 (192) T cd03232 83 -YVEQQDVHSPNLTVREALRFS---ALL----------RGLSVEQRKRLTIGVELA--AKPSILFLD-----EPTSG-LD 140 (192) T ss_pred -EEECCHHCCCCCHHHHHHHHH---HHH----------HCCCHHHHHHHHHHHHHH--CCCCEEEEE-----CCCCC-CC T ss_conf -994113307345499999866---777----------337976765899999984--499889984-----88768-89 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEE-EECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC Q ss_conf 137889999999999998827919997-71382201689999840101432422331387889725 Q gi|254780332|r 364 NRVLEITGITMALKALAKELNIPIIAL-SQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504) Q Consensus 364 ~r~~~i~~is~~lK~lA~e~~ipvi~l-sQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504) T Consensus 141 --~~~~~~i~~~l~~l~~~-g~tiii~th~~-------------------~~~i~~~~Driivl~~ 184 (192) T cd03232 141 --SQAAYNIVRFLKKLADS-GQAILCTIHQP-------------------SASIFEKFDRLLLLKR 184 (192) T ss_pred --HHHHHHHHHHHHHHHHC-CCEEEEEECCC-------------------HHHHHHHCCEEEEECC T ss_conf --89999999999999969-99999998363-------------------7999987999999979

HHsearch alignment for GI: 254780332 and conserved domain: cd03232