HHsearch alignment for GI: 254780332 and conserved domain: cd03245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.38 E-value=0.063 Score=34.14 Aligned_cols=173 Identities=19% Similarity=0.262 Sum_probs=84.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHH
Q ss_conf 1377655641677267762131002769999999999851011123333321247975899958---5217999878999
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIIS 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is 283 (504)
T Consensus 18 ~~L~~isl~i~~G~~v~ivG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~i~g~~~~~~~~~~~r~-~i~ 81 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA-GLYKP--------------TSGSVLLDGTDIRQLDPADLRR-NIG 81 (220)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCCEEEECCEEHHHHCHHHHHH-CEE
T ss_conf 5153459998799999999999985999999996-72547--------------8658999999957725999973-269
Q ss_pred HHHHHC-------CCCCCCC--CCCHHHHHHHHH---HHHHHHHCCE----EEEC-CCCCCHHH--HHHHHHHHCCCCCC
Q ss_conf 987410-------1100012--137688998999---9999862780----7825-89988999--99988640224447
Q gi|254780332|r 284 EQTEVP-------SSKIRRG--ELTRPDYEKIVA---CSQVMQKLPL----YIDQ-TGGISMSQ--LATRARRLKRQRGL 344 (504)
Q Consensus 284 ~~s~I~-------~~~i~~g--~l~~~e~~~i~~---a~~~l~~~~l----~I~d-~~~~ti~~--I~~~~r~~~~~~gi 344 (504)
T Consensus 82 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~i~~~~~~~~l~~~i~~~~~g~~t~i~~~g~~LSgGqkQri~lARal~~--~~ 159 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DP 159 (220)
T ss_pred EECCCCEEECCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHC--CC
T ss_conf 9916896766759998535797789799999999959789997375543453589997218999999999999955--99
Q ss_pred CEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEE
Q ss_conf 46776713532566443211378899999999999988279199977138220168999984010143242233138788
Q gi|254780332|r 345 DLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVL 424 (504)
Q Consensus 345 ~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~ 424 (504)
T Consensus 160 ~ililD-----Epts~L-D~~--~~~~i~~~l~~~~~--~~Tvi~itH-----------~~~---------~~~~~D~Ii 209 (220)
T cd03245 160 PILLLD-----EPTSAM-DMN--SEERLKERLRQLLG--DKTLIIITH-----------RPS---------LLDLVDRII 209 (220)
T ss_pred CEEEEE-----CCCCCC-CHH--HHHHHHHHHHHHCC--CCEEEEEEC-----------CHH---------HHHHCCEEE
T ss_conf 999996-----875688-989--99999999998769--998999935-----------988---------998499999
Q ss_pred EEE
Q ss_conf 972
Q gi|254780332|r 425 FVI 427 (504)
Q Consensus 425 ~l~ 427 (504)
T Consensus 210 vl~ 212 (220)
T cd03245 210 VMD 212 (220)
T ss_pred EEE
T ss_conf 998