HHsearch alignment for GI: 254780332 and conserved domain: cd03249

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.26  E-value=0.07  Score=33.78  Aligned_cols=172  Identities=20%  Similarity=0.303  Sum_probs=83.7

Q ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf             377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r  208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE  284 (504)
Q Consensus       208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~  284 (504)
T Consensus        18 vL~~isl~i~~G~~iaIvG~sGsGKSTLl~ll~-gl~~p--------------~~G~I~idg~~i~~~~~~~~-r~~i~~   81 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDP--------------TSGEILLDGVDIRDLNLRWL-RSQIGL   81 (238)
T ss_pred             EECCEEEEECCCCEEEEECCCCCCHHHHHHHHH-HCCCC--------------CCCEEEECCEECCCCCHHHH-HHCEEE
T ss_conf             222558997699999999999998999999982-38618--------------85189999999231899999-740699


Q ss_pred             HHHHC-------CCCCCCC--CCCHHHHHHHHHHH---HHHHHCC----EEEEC-CCCCCHHHH--HHHHHHHCCCCCCC
Q ss_conf             87410-------1100012--13768899899999---9986278----07825-899889999--99886402244474
Q gi|254780332|r  285 QTEVP-------SSKIRRG--ELTRPDYEKIVACS---QVMQKLP----LYIDQ-TGGISMSQL--ATRARRLKRQRGLD  345 (504)
Q Consensus       285 ~s~I~-------~~~i~~g--~l~~~e~~~i~~a~---~~l~~~~----l~I~d-~~~~ti~~I--~~~~r~~~~~~gi~  345 (504)
T Consensus        82 v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~a~~~~~l~~~i~~lp~gl~t~ige~G~~LSgGQ~QRialARAl~~--~~~  159 (238)
T cd03249          82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPK  159 (238)
T ss_pred             ECCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf             915896727529999633687899999999999978524355186877225078678589999999999999965--999


Q ss_pred             EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf             67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r  346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF  425 (504)
Q Consensus       346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~  425 (504)
T Consensus       160 ililD-----E~tsaL-D~~te--~~i~~~l~~~~~--~~TvI~ItH-------r----l-------~-~l-~~~D~Iiv  209 (238)
T cd03249         160 ILLLD-----EATSAL-DAESE--KLVQEALDRAMK--GRTTIVIAH-------R----L-------S-TI-RNADLIAV  209 (238)
T ss_pred             EEEEE-----CCCCCC-CHHHH--HHHHHHHHHHHC--CCEEEEECC-------C----H-------H-HH-HHCCEEEE
T ss_conf             99997-----876678-99999--999999999809--998999848-------8----8-------8-99-85999999


Q ss_pred             EE
Q ss_conf             72
Q gi|254780332|r  426 VI  427 (504)
Q Consensus       426 l~  427 (504)
T Consensus       210 l~  211 (238)
T cd03249         210 LQ  211 (238)
T ss_pred             EE
T ss_conf             98