HHsearch alignment for GI: 254780332 and conserved domain: cd03261
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.0025 Score=44.84 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC---CHHHHH--HH
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852---179998--78
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM---SSEQLA--TR 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM---s~~el~--~R 280 (504)
T Consensus 13 ~~~L~~isl~i~~Ge~~~iiG~SGsGKSTll~~i~g-L~~p--------------~~G~I~~~g~~i~~~~~~~~~~~r~ 77 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG-LLRP--------------DSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCC--------------CCCEEEECCEECCCCCHHHHHHHHC
T ss_conf 988826064887998999999999729999999975-9998--------------9858999999999899889999757
Q ss_pred HHHH-------------HHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCEE--EECCC-CCC--HHHHHHHHHHHCCC
Q ss_conf 9999-------------87410110001213768899-899999998627807--82589-988--99999988640224
Q gi|254780332|r 281 IISE-------------QTEVPSSKIRRGELTRPDYE-KIVACSQVMQKLPLY--IDQTG-GIS--MSQLATRARRLKRQ 341 (504)
Q Consensus 281 ~is~-------------~s~I~~~~i~~g~l~~~e~~-~i~~a~~~l~~~~l~--I~d~~-~~t--i~~I~~~~r~~~~~ 341 (504)
T Consensus 78 ~ig~vfQ~~~Lf~~lTv~eNv~~~l~~~~~~~~~~~~~r~~~~L---~~vgL~~~~~~~p~~LSGGq~QRvaIARALv-- 152 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKL---EAVGLRGAEDLYPAELSGGMKKRVALARALA-- 152 (235)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHCCCCHHHHCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 82997049865899969999999999957999999999999999---8679925764784106999999999999985--
Q ss_pred CCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 44746776713532566443211378899999999999988279199977138220168999984010143242233138
Q gi|254780332|r 342 RGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 342 ~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD 421 (504)
T Consensus 153 ~~P~illlD-----EPts~-LDp--~~~~~i~~li~~l~~~~g~T~i~vTH----------------d---~~~a~~~~D 205 (235)
T cd03261 153 LDPELLLYD-----EPTAG-LDP--IASGVIDDLIRSLKKELGLTSIMVTH----------------D---LDTAFAIAD 205 (235)
T ss_pred CCCCEEEEE-----CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCC
T ss_conf 489989980-----88664-798--99999999999999972999999898----------------9---899999699
Q ss_pred EEEEEEC
Q ss_conf 7889725
Q gi|254780332|r 422 VVLFVIR 428 (504)
Q Consensus 422 ~v~~l~R 428 (504)
T Consensus 206 ri~vm~~ 212 (235)
T cd03261 206 RIAVLYD 212 (235)
T ss_pred EEEEEEC
T ss_conf 8999989