>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=95.86 E-value=0.15 Score=31.16 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=86.0 Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCEEEEEEC------CCCHHHHH Q ss_conf 0137765564167726776213100276999999999985101112333332-1247975899958------52179998 Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY-KTINGGIVGFYSL------EMSSEQLA 278 (504) Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~-~~~~g~~Vl~fSl------EMs~~el~ 278 (504) T Consensus 13 ~~al~~vs~~v~~Gei~gllG~NGaGKTTll~~i-~Gl~~p~~G~i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l 91 (210) T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMI-LGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210) T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHH T ss_conf 9997542678879959999989998499999999-600266899899999868844360199964766679999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEE--EECC-CCCCHHHHH--HHHHHHCCCCCCCEEEECCHH Q ss_conf 78999987410110001213768899899999998627807--8258-998899999--988640224447467767135 Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLY--IDQT-GGISMSQLA--TRARRLKRQRGLDLLIVDYIQ 353 (504) Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~--I~d~-~~~ti~~I~--~~~r~~~~~~gi~~vvIDYLq 353 (504) T Consensus 92 -~~~~~l~g~~~---------~~~~~~~~~~l~~---~~L~~~~~~~~~~LSgG~kqrv~la~al~--~~p~lllLD--- 153 (210) T cd03269 92 -VYLAQLKGLKK---------EEARRRIDEWLER---LELSEYANKRVEELSKGNQQKVQFIAAVI--HDPELLILD--- 153 (210) T ss_pred -HHHHHHCCCCH---------HHHHHHHHHHHHH---CCCCHHHCCHHHHCCHHHHHHHHHHHHHH--CCCCEEEEE--- T ss_conf -99999749999---------9999999999998---69970548805778998999999999995--799899992--- Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC Q ss_conf 325664432113788999999999999882791999771382201689999840101432422331387889725 Q gi|254780332|r 354 LMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504) Q Consensus 354 li~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504) T Consensus 154 --EPt~-gLDp--~~~~~i~~~i~~~~~~-g~til~ssH~-------------------l~e~~~~~d~i~vl~~ 203 (210) T cd03269 154 --EPFS-GLDP--VNVELLKDVIRELARA-GKTVILSTHQ-------------------MELVEELCDRVLLLNK 203 (210) T ss_pred --CCCC-CCCH--HHHHHHHHHHHHHHHC-CCEEEEECCC-------------------HHHHHHHCCEEEEEEC T ss_conf --8866-7999--9999999999999968-9899998884-------------------8999996999999989

HHsearch alignment for GI: 254780332 and conserved domain: cd03269