HHsearch alignment for GI: 254780332 and conserved domain: cd03290
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.82 E-value=0.0096 Score=40.36 Aligned_cols=178 Identities=20% Similarity=0.313 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHHH
Q ss_conf 10137765564167726776213100276999999999985101112333332124797589995---852179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R~ 281 (504)
T Consensus 13 ~~~vL~~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~-g~~~~-------------~~G-~I~~~~~~~~~~~~~~~~~~~ 77 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAIL-GEMQT-------------LEG-KVHWSNKNESEPSFEATRSRN 77 (218)
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-CCCCC-------------CCC-EEEECCEECCCCCHHHHHHHH
T ss_conf 990564769998699999999999980999999985-55656-------------776-499898666864677788875
Q ss_pred ---HHHHHHHC-------CCCCCCC-CCCHHHHHHHHHHHHH---HHHCC----EEEECCC-CCCHHHH--HHHHHHHCC
Q ss_conf ---99987410-------1100012-1376889989999999---86278----0782589-9889999--998864022
Q gi|254780332|r 282 ---ISEQTEVP-------SSKIRRG-ELTRPDYEKIVACSQV---MQKLP----LYIDQTG-GISMSQL--ATRARRLKR 340 (504)
Q Consensus 282 ---is~~s~I~-------~~~i~~g-~l~~~e~~~i~~a~~~---l~~~~----l~I~d~~-~~ti~~I--~~~~r~~~~ 340 (504)
T Consensus 78 r~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~i~~~g~~LSGGQ~QRi~iARal~~ 157 (218)
T cd03290 78 RYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65389981566567889999873379778899999999998777787510543054056788779899999999999844
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4447467767135325664432113-788999999999999882791999771382201689999840101432422331
Q gi|254780332|r 341 QRGLDLLIVDYIQLMTTSKKIEENR-VLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQD 419 (504)
Q Consensus 341 ~~gi~~vvIDYLqli~~~~~~~~~r-~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 419 (504)
T Consensus 158 --~~~illlD-----EptsaL-D~~~~~~i--~~~~i~~~~~~~~~TvI~itH----------------~l---~~l~-~ 207 (218)
T cd03290 158 --NTNIVFLD-----DPFSAL-DIHLSDHL--MQEGILKFLQDDKRTLVLVTH----------------KL---QYLP-H 207 (218)
T ss_pred --CCCEEEEE-----CCCCCC-CHHHHHHH--HHHHHHHHHCCCCCEEEEEEC----------------CH---HHHH-H
T ss_conf --89999998-----965578-86789999--999999997079939999906----------------98---8998-3
Q ss_pred CCEEEEEE
Q ss_conf 38788972
Q gi|254780332|r 420 ADVVLFVI 427 (504)
Q Consensus 420 AD~v~~l~ 427 (504)
T Consensus 208 aD~Iivm~ 215 (218)
T cd03290 208 ADWIIAMK 215 (218)
T ss_pred CCEEEEEC
T ss_conf 99999985