>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.48 E-value=0.0029 Score=44.37 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=90.6 Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC------CCHHHHHH Q ss_conf 013776556416772677621310027699999999998510111233333212479758999585------21799987 Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE------MSSEQLAT 279 (504) Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE------Ms~~el~~ 279 (504) T Consensus 17 ~~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~-Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~ 95 (220) T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA-GLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220) T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHH T ss_conf 99996718898799899999999957999999997-59998873899999967888988799924885377887999998 Q ss_pred HHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCEEEECCC-CCCHHH--HHHHHHHHCCCCCCCEEEECCHHHC Q ss_conf 89999874101100012137688-9989999999862780782589-988999--9998864022444746776713532 Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPD-YEKIVACSQVMQKLPLYIDQTG-GISMSQ--LATRARRLKRQRGLDLLIVDYIQLM 355 (504) Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e-~~~i~~a~~~l~~~~l~I~d~~-~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli 355 (504) T Consensus 96 ----------~~-l~~~~~~~~~~~~~v~~~l~~~g-L~~~~~~~p~~LSGGqkQRvaiARaL~--~~P~llllD----- 156 (220) T cd03293 96 ----------LG-LELQGVPKAEARERAEELLELVG-LSGFENAYPHQLSGGMRQRVALARALA--VDPDVLLLD----- 156 (220) T ss_pred ----------HH-HHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEE----- T ss_conf ----------89-98659998999999999999878-954761893129999999999999986--699999980----- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE Q ss_conf 566443211378899999999999988279199977138220168999984010143242233138788972 Q gi|254780332|r 356 TTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504) Q Consensus 356 ~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504) T Consensus 157 EPts~-LD~--~~~~~i~~~l~~l~~~~g~tii~vTH----------------d---l~~a~~laDri~vm~ 206 (220) T cd03293 157 EPFSA-LDA--LTREQLQEELLDIWRETGKTVLLVTH----------------D---IDEAVFLADRVVVLS 206 (220) T ss_pred CCCCC-CCH--HHHHHHHHHHHHHHHHCCCEEEEECC----------------C---HHHHHHHCCEEEEEE T ss_conf 88765-699--99999999999999851999999888----------------8---999999699999985

HHsearch alignment for GI: 254780332 and conserved domain: cd03293