HHsearch alignment for GI: 254780332 and conserved domain: cd03295
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0066 Score=41.58 Aligned_cols=178 Identities=19% Similarity=0.242 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 01377655641677267762131002769999999999851011123333321247975899958521799987899998
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQ 285 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~ 285 (504)
T Consensus 14 ~~al~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~-gl~~p~~G~I~-------i~g~~i~----~~~~~~l-rr~ig~v 80 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPTSGEIF-------IDGEDIR----EQDPVEL-RRKIGYV 80 (242)
T ss_pred CEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEE-------ECCEECC----CCCHHHH-HCCCEEE
T ss_conf 88983027688699899999999956999999997-59999815999-------9999999----9997897-3886799
Q ss_pred -------------HHHCCC-CCCCCCCCHHHH-HHHHHHHHHHHHCC-EEE-ECCC-CCCHH--HHHHHHHHHCCCCCCC
Q ss_conf -------------741011-000121376889-98999999986278-078-2589-98899--9999886402244474
Q gi|254780332|r 286 -------------TEVPSS-KIRRGELTRPDY-EKIVACSQVMQKLP-LYI-DQTG-GISMS--QLATRARRLKRQRGLD 345 (504)
Q Consensus 286 -------------s~I~~~-~i~~g~l~~~e~-~~i~~a~~~l~~~~-l~I-~d~~-~~ti~--~I~~~~r~~~~~~gi~ 345 (504)
T Consensus 81 fQ~~~Lfp~ltV~eNi~~~~~~-~-~~~~~~~~~rv~ell~~v-~L~~~~~~~~~p~~LSGGqkQRvaiARAl~--~~P~ 155 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKL-L-KWPKEKIRERADELLALV-GLDPAEFADRYPHELSGGQQQRVGVARALA--ADPP 155 (242)
T ss_pred ECCCCCCCCCCHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHHC-CCCCHHHCCCCHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf 1799758888299999999997-5-999999999999999874-999301100795668999999999999996--2999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
T Consensus 156 ilLlD-----EP~sa-LD~--~~~~~i~~~l~~l~~~~~~T~i~vTH----------------d~---~ea~~~aDri~v 208 (242)
T cd03295 156 LLLMD-----EPFGA-LDP--ITRDQLQEEFKRLQQELGKTIVFVTH----------------DI---DEAFRLADRIAI 208 (242)
T ss_pred EEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEE
T ss_conf 99981-----87654-698--99999999999999975999999998----------------99---999996998999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
T Consensus 209 m~~ 211 (242)
T cd03295 209 MKN 211 (242)
T ss_pred EEC
T ss_conf 989