HHsearch alignment for GI: 254780332 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0012 Score=47.36 Aligned_cols=178 Identities=19% Similarity=0.248 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995852179998789999-
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE- 284 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~- 284 (504)
T Consensus 15 ~~~l~~is~~v~~Ge~~~iiGpSGsGKSTll~~i~-Gl~~p--------------~~G~I~~~g~~i~~~~~~~r~ig~v 79 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA-GLERP--------------DSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHCCEEEE
T ss_conf 89986638698899899999999977999999997-69999--------------8639999999999999656776798
Q ss_pred ------------HHHHCCC-CCCC--CCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCC
Q ss_conf ------------8741011-0001--21376889-989999999862780782589-988--999999886402244474
Q gi|254780332|r 285 ------------QTEVPSS-KIRR--GELTRPDY-EKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLD 345 (504)
Q Consensus 285 ------------~s~I~~~-~i~~--g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~ 345 (504)
T Consensus 80 fQ~~~Lfp~ltV~eNi~~~l~~~~~~~~~~~~e~~~rv~~~l~~v~-l~~~~~~~p~eLSGGq~QRVaiARAl~--~~P~ 156 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-LDWLADRYPAQLSGGQRQRVALARALA--VEPK 156 (239)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf 1782106799699999879973354569989999999999986549-976774896669998989999999876--4999
Q ss_pred EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf 67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r 346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF 425 (504)
Q Consensus 346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~ 425 (504)
T Consensus 157 vlllD-----EP~s~L-D~--~~~~~i~~~l~~l~~e~~~T~i~vTH----------------d~---~~a~~laDri~v 209 (239)
T cd03296 157 VLLLD-----EPFGAL-DA--KVRKELRRWLRRLHDELHVTTVFVTH----------------DQ---EEALEVADRVVV 209 (239)
T ss_pred EEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEE
T ss_conf 89973-----886646-99--99999999999999985998999988----------------99---999996999999
Q ss_pred EEC
Q ss_conf 725
Q gi|254780332|r 426 VIR 428 (504)
Q Consensus 426 l~R 428 (504)
T Consensus 210 m~~ 212 (239)
T cd03296 210 MNK 212 (239)
T ss_pred EEC
T ss_conf 989