HHsearch alignment for GI: 254780332 and conserved domain: cd03296

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36  E-value=0.0012  Score=47.36  Aligned_cols=178  Identities=19%  Similarity=0.248  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-
Q ss_conf             0137765564167726776213100276999999999985101112333332124797589995852179998789999-
Q gi|254780332|r  206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE-  284 (504)
Q Consensus       206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~-  284 (504)
T Consensus        15 ~~~l~~is~~v~~Ge~~~iiGpSGsGKSTll~~i~-Gl~~p--------------~~G~I~~~g~~i~~~~~~~r~ig~v   79 (239)
T cd03296          15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA-GLERP--------------DSGTILFGGEDATDVPVQERNVGFV   79 (239)
T ss_pred             EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCC--------------CCEEEEECCEECCCCCHHHCCEEEE
T ss_conf             89986638698899899999999977999999997-69999--------------8639999999999999656776798


Q ss_pred             ------------HHHHCCC-CCCC--CCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCC
Q ss_conf             ------------8741011-0001--21376889-989999999862780782589-988--999999886402244474
Q gi|254780332|r  285 ------------QTEVPSS-KIRR--GELTRPDY-EKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLD  345 (504)
Q Consensus       285 ------------~s~I~~~-~i~~--g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~  345 (504)
T Consensus        80 fQ~~~Lfp~ltV~eNi~~~l~~~~~~~~~~~~e~~~rv~~~l~~v~-l~~~~~~~p~eLSGGq~QRVaiARAl~--~~P~  156 (239)
T cd03296          80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-LDWLADRYPAQLSGGQRQRVALARALA--VEPK  156 (239)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCC
T ss_conf             1782106799699999879973354569989999999999986549-976774896669998989999999876--4999


Q ss_pred             EEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
Q ss_conf             67767135325664432113788999999999999882791999771382201689999840101432422331387889
Q gi|254780332|r  346 LLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLF  425 (504)
Q Consensus       346 ~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~  425 (504)
T Consensus       157 vlllD-----EP~s~L-D~--~~~~~i~~~l~~l~~e~~~T~i~vTH----------------d~---~~a~~laDri~v  209 (239)
T cd03296         157 VLLLD-----EPFGAL-DA--KVRKELRRWLRRLHDELHVTTVFVTH----------------DQ---EEALEVADRVVV  209 (239)
T ss_pred             EEEEC-----CCCCCC-CH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEE
T ss_conf             89973-----886646-99--99999999999999985998999988----------------99---999996999999


Q ss_pred             EEC
Q ss_conf             725
Q gi|254780332|r  426 VIR  428 (504)
Q Consensus       426 l~R  428 (504)
T Consensus       210 m~~  212 (239)
T cd03296         210 MNK  212 (239)
T ss_pred             EEC
T ss_conf             989