HHsearch alignment for GI: 254780332 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.022 Score=37.66 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=85.8
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH-----------
Q ss_conf 167726776213100276999999999985101112333332124797589995852179998789999-----------
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISE----------- 284 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~----------- 284 (504)
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~-li~Gl~~p~--------------sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~l 85 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLN-LIAGFETPQ--------------SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHHH-HHHCCCCCC--------------CEEEEECCEECCCCCHHHCCEEEEECCCCCCCCC
T ss_conf 8899899999999955999999-997699988--------------5299999999999998898679995388668999
Q ss_pred --HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf --8741011000121376889989999999862780782589-988--99999988640224447467767135325664
Q gi|254780332|r 285 --QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 285 --~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
T Consensus 86 tV~eNi~~~l~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~~p~~LSGGqkQRvaiARAL~--~~P~ilLlD-----EPts 157 (211)
T cd03298 86 TVEQNVGLGLSPGLKLTAEDRQAIEVALARVG-LAGLEKRLPGELSGGERQRVALARVLV--RDKPVLLLD-----EPFA 157 (211)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHHHHCCHHHCCHHHHHHHHHHHHHH--CCCCEEEEC-----CCCC
T ss_conf 49999875886468882999999999998769-987872894558989999999999986--599999971-----8876
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 43211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 158 ~-LD~--~~~~~l~~~l~~l~~~~~~Tvi~vTH----------------d~---~ea~~~adriivl~ 203 (211)
T cd03298 158 A-LDP--ALRAEMLDLVLDLHAETKMTVLMVTH----------------QP---EDAKRLAQRVVFLD 203 (211)
T ss_pred C-CCH--HHHHHHHHHHHHHHHHHCCEEEEECC----------------CH---HHHHHHCCEEEEEE
T ss_conf 5-598--99999999999999974998999988----------------99---99999699999998