HHsearch alignment for GI: 254780332 and conserved domain: cd03300

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27  E-value=0.0034  Score=43.78  Aligned_cols=175  Identities=19%  Similarity=0.308  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH---
Q ss_conf             13776556416772677621310027699999999998510111233333212479758999585217999878999---
Q gi|254780332|r  207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS---  283 (504)
Q Consensus       207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is---  283 (504)
T Consensus        14 ~vl~~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~-Gl~~p~~G~I-------~~~g~~v~----~~~~~---~r~ig~Vf   78 (232)
T cd03300          14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA-GFETPTSGEI-------LLDGKDIT----NLPPH---KRPVNTVF   78 (232)
T ss_pred             EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEE-------EECCEECC----CCCHH---HCCEEEEE
T ss_conf             8987617488799899999999983999999997-7999985399-------99999999----99954---57756991


Q ss_pred             ----------HHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             ----------98741011000121376889-989999999862780782589-988--9999998864022444746776
Q gi|254780332|r  284 ----------EQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLDLLIV  349 (504)
Q Consensus       284 ----------~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~~vvI  349 (504)
T Consensus        79 Q~~~Lfp~ltV~~Nva~~-l~~~~~~~~e~~~rv~e~l~~v-~l~~~~~~~p~~LSGGqkQRVaiARAl~--~~P~llll  154 (232)
T cd03300          79 QNYALFPHLTVFENIAFG-LRLKKLPKAEIKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALV--NEPKVLLL  154 (232)
T ss_pred             CCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHC-CCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf             488547789199998779-9876999999999999998758-9778761996669989999999999986--59999998


Q ss_pred             CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf             713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r  350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI  427 (504)
Q Consensus       350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~  427 (504)
T Consensus       155 D-----EP~s~L-D--~~~~~~i~~~l~~l~~~~~~T~i~VTH----------------d---~~ea~~ladri~vm~  205 (232)
T cd03300         155 D-----EPLGAL-D--LKLRKDMQLELKRLQKELGITFVFVTH----------------D---QEEALTMSDRIAVMN  205 (232)
T ss_pred             C-----CCCCCC-C--HHHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEE
T ss_conf             0-----887646-9--999999999999999985999999999----------------9---999999699999998