HHsearch alignment for GI: 254780332 and conserved domain: cd03300
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.0034 Score=43.78 Aligned_cols=175 Identities=19% Similarity=0.308 Sum_probs=85.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH---
Q ss_conf 13776556416772677621310027699999999998510111233333212479758999585217999878999---
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS--- 283 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is--- 283 (504)
T Consensus 14 ~vl~~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~-Gl~~p~~G~I-------~~~g~~v~----~~~~~---~r~ig~Vf 78 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA-GFETPTSGEI-------LLDGKDIT----NLPPH---KRPVNTVF 78 (232)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEE-------EECCEECC----CCCHH---HCCEEEEE
T ss_conf 8987617488799899999999983999999997-7999985399-------99999999----99954---57756991
Q ss_pred ----------HHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHCCEEEECCC-CCC--HHHHHHHHHHHCCCCCCCEEEE
Q ss_conf ----------98741011000121376889-989999999862780782589-988--9999998864022444746776
Q gi|254780332|r 284 ----------EQTEVPSSKIRRGELTRPDY-EKIVACSQVMQKLPLYIDQTG-GIS--MSQLATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 284 ----------~~s~I~~~~i~~g~l~~~e~-~~i~~a~~~l~~~~l~I~d~~-~~t--i~~I~~~~r~~~~~~gi~~vvI 349 (504)
T Consensus 79 Q~~~Lfp~ltV~~Nva~~-l~~~~~~~~e~~~rv~e~l~~v-~l~~~~~~~p~~LSGGqkQRVaiARAl~--~~P~llll 154 (232)
T cd03300 79 QNYALFPHLTVFENIAFG-LRLKKLPKAEIKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALV--NEPKVLLL 154 (232)
T ss_pred CCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHC-CCHHHHCCCHHHCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 488547789199998779-9876999999999999998758-9778761996669989999999999986--59999998
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 713532566443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 155 D-----EP~s~L-D--~~~~~~i~~~l~~l~~~~~~T~i~VTH----------------d---~~ea~~ladri~vm~ 205 (232)
T cd03300 155 D-----EPLGAL-D--LKLRKDMQLELKRLQKELGITFVFVTH----------------D---QEEALTMSDRIAVMN 205 (232)
T ss_pred C-----CCCCCC-C--HHHHHHHHHHHHHHHHHHCCEEEEECC----------------C---HHHHHHHCCEEEEEE
T ss_conf 0-----887646-9--999999999999999985999999999----------------9---999999699999998