HHsearch alignment for GI: 254780332 and conserved domain: cd03369
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.83 E-value=0.1 Score=32.52 Aligned_cols=166 Identities=22% Similarity=0.262 Sum_probs=78.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 37765564167726776213100276999999999985101112333332124797589995852179998789999874
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTE 287 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~ 287 (504)
T Consensus 23 iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~-~~p~~G-------~I~idg~di~----~~~~~~~r-~~i~~v~Q 89 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-LEAEEG-------KIEIDGIDIS----TIPLEDLR-SSLTIIPQ 89 (207)
T ss_pred CEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCC-------EEEECCEECC----CCCHHHHH-HHCEEEEC
T ss_conf 24025889869999999999998799999999987-288887-------8999999954----07999999-51537703
Q ss_pred HC---CCCCCC-----CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 10---110001-----21376889989999999862780782589988999--999886402244474677671353256
Q gi|254780332|r 288 VP---SSKIRR-----GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 288 I~---~~~i~~-----g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
T Consensus 90 ~~~lf~~ti~~Nl~~~~~~~~~---~i~~~l~-~~~~------g~~LSgGqkQrl~iARal~~--~p~ililD-----Ep 152 (207)
T cd03369 90 DPTLFSGTIRSNLDPFDEYSDE---EIYGALR-VSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLD-----EA 152 (207)
T ss_pred CCEECCCCHHHHCCCCCCCCHH---HHHHHHH-HCCC------CCCCCHHHHHHHHHHHHHHC--CCCEEEEE-----CC
T ss_conf 5633275499873803335899---9999986-0478------88869899999999999970--89999981-----63
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 153 ts~L-D~~~--~~~i~~~i~~~~~--~~Tvi~itH-------------~l~------~~-~~~D~Iivl~~ 198 (207)
T cd03369 153 TASI-DYAT--DALIQKTIREEFT--NSTILTIAH-------------RLR------TI-IDYDKILVMDA 198 (207)
T ss_pred CCCC-CHHH--HHHHHHHHHHHCC--CCEEEEEEC-------------CHH------HH-HHCCEEEEEEC
T ss_conf 4448-9899--9999999999759--999999907-------------999------99-85999999989