HHsearch alignment for GI: 254780332 and conserved domain: pfam00270

>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=95.98  E-value=0.17  Score=30.87  Aligned_cols=140  Identities=15%  Similarity=0.093  Sum_probs=68.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCC--CCCC
Q ss_conf             772677621310027699999999998510111233333212479758999585217-9998789999874101--1000
Q gi|254780332|r  218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPS--SKIR  294 (504)
Q Consensus       218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~--~~i~  294 (504)
T Consensus        13 ~g~~~iv~~pTGsGKT~~~~~~~l~~~~~------------~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~~~-   79 (167)
T pfam00270        13 EGKDVLVQAPTGSGKTLAFLLPALQALLK------------NPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVALL-   79 (167)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHH------------CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE-
T ss_conf             69978998899975899999999999874------------77898799990608888899988643210267640464-


Q ss_pred             CCCCCH-HHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             121376-889989999999862780782589988999999886402-244474677671353256644321137889999
Q gi|254780332|r  295 RGELTR-PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGI  372 (504)
Q Consensus       295 ~g~l~~-~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~i  372 (504)
T Consensus        80 ~g~~~~~~~~~~~------~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~-----~~g~~~~~i  143 (167)
T pfam00270        80 YGGDSPKEQLRKL------KKGPDILVG-----TPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQ-----GFGDDLEEI  143 (167)
T ss_pred             CCCCCHHHHHHHH------CCCCCEEEE-----CHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCC-----CHHHHHHHH
T ss_conf             1786178898764------057707994-----789999999803312110038998808867335-----829999999


Q ss_pred             HHHHHHHHHHHCCCEEEEE
Q ss_conf             9999999988279199977
Q gi|254780332|r  373 TMALKALAKELNIPIIALS  391 (504)
Q Consensus       373 s~~lK~lA~e~~ipvi~ls  391 (504)
T Consensus       144 l~~l~-----~~~q~v~~S  157 (167)
T pfam00270       144 LRRLP-----PKRQILLLS  157 (167)
T ss_pred             HHHCC-----CCCCEEEEE
T ss_conf             98579-----999789997