HHsearch alignment for GI: 254780332 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=95.98 E-value=0.17 Score=30.87 Aligned_cols=140 Identities=15% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHHCC--CCCC
Q ss_conf 772677621310027699999999998510111233333212479758999585217-9998789999874101--1000
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS-EQLATRIISEQTEVPS--SKIR 294 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~-~el~~R~is~~s~I~~--~~i~ 294 (504)
T Consensus 13 ~g~~~iv~~pTGsGKT~~~~~~~l~~~~~------------~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~~~- 79 (167)
T pfam00270 13 EGKDVLVQAPTGSGKTLAFLLPALQALLK------------NPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVALL- 79 (167)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHH------------CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE-
T ss_conf 69978998899975899999999999874------------77898799990608888899988643210267640464-
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 121376-889989999999862780782589988999999886402-244474677671353256644321137889999
Q gi|254780332|r 295 RGELTR-PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGI 372 (504)
Q Consensus 295 ~g~l~~-~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~i 372 (504)
T Consensus 80 ~g~~~~~~~~~~~------~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~-----~~g~~~~~i 143 (167)
T pfam00270 80 YGGDSPKEQLRKL------KKGPDILVG-----TPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQ-----GFGDDLEEI 143 (167)
T ss_pred CCCCCHHHHHHHH------CCCCCEEEE-----CHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCC-----CHHHHHHHH
T ss_conf 1786178898764------057707994-----789999999803312110038998808867335-----829999999
Q ss_pred HHHHHHHHHHHCCCEEEEE
Q ss_conf 9999999988279199977
Q gi|254780332|r 373 TMALKALAKELNIPIIALS 391 (504)
Q Consensus 373 s~~lK~lA~e~~ipvi~ls 391 (504)
T Consensus 144 l~~l~-----~~~q~v~~S 157 (167)
T pfam00270 144 LRRLP-----PKRQILLLS 157 (167)
T ss_pred HHHCC-----CCCCEEEEE
T ss_conf 98579-----999789997