HHsearch alignment for GI: 254780332 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=93.60 E-value=0.43 Score=27.80 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 677267762131002769999999999851011123333321247975899958-5217999878999987410110001
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL-EMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl-EMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
T Consensus 12 ~~~~llV~Ag-AGSGKT~~L~~Ri~~li~~~~~~-----------p~~IL~lTFT~kAA~Em~~Ri~~~l~~~~~~~~~i 79 (494)
T pfam00580 12 LGGPLLVLAG-AGTGKTRVLTERIAYLILEGGID-----------PEEILAVTFTNKAAREMKERILKLLGKAEASELNI 79 (494)
T ss_pred CCCCEEEEEE-CCHHHHHHHHHHHHHHHHHCCCC-----------HHHEEEEECHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 9999799971-87068999999999999818999-----------74787670289999999999998738344688678
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 2137688998999999986278
Q gi|254780332|r 296 GELTRPDYEKIVACSQVMQKLP 317 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l~~~~ 317 (504)
T Consensus 80 ~T~Hsf~~~iLr~~~~~~g~~~ 101 (494)
T pfam00580 80 STFHSFCLRILRKYANRIGDLL 101 (494)
T ss_pred EHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5499999999999899837777