HHsearch alignment for GI: 254780332 and conserved domain: pfam00772
>pfam00772 DnaB DnaB-like helicase N terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Probab=99.84 E-value=3.4e-20 Score=173.21 Aligned_cols=103 Identities=43% Similarity=0.600 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 78997899999999983297899999944296663798889999999999983998686438889731798323594899
Q gi|254780332|r 22 ESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQY 101 (504)
Q Consensus 22 ~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l~~igg~~y 101 (504)
T Consensus 1 ~~p~~~eaE~~lLg~lL~~~~~~~~i~~~l~~edF~~~~h~~If~~i~~l~~~~~~iD~~tl~~~l~~~~~~~~~gg~~y 80 (103)
T pfam00772 1 VPPHSIEAEQAVLGALLLDPEAIDEVADILKPEDFYDPAHRLIFEAILELYDKGKPIDPVTVAEELERKGKLEEVGGIAY 80 (103)
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCHHHH
T ss_conf 93897999999999999697489999972799984959999999999999845699689999999976798142375999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999622112223677878789
Q gi|254780332|r 102 LARLASEAVSIINTEDYGRIIYG 124 (504)
Q Consensus 102 L~~L~~~~~s~~n~~~ya~~Ike 124 (504)
T Consensus 81 L~~L~~~~~~~~~~~~Ya~~v~e 103 (103)
T pfam00772 81 LAELADNVPSAANIEYYARIVKE 103 (103)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 99999829979999999998709