HHsearch alignment for GI: 254780332 and conserved domain: pfam06745

>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.72  E-value=2.3e-15  Score=136.45  Aligned_cols=214  Identities=25%  Similarity=0.263  Sum_probs=139.2

Q ss_pred             CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r  202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR  280 (504)
Q Consensus       202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R  280 (504)
T Consensus         1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~--------------~ge~~lYis~ee~~~~l~~~   66 (231)
T pfam06745         1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALE--------------YGEPGVYVTLEEPPEDLREN   66 (231)
T ss_pred             CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEEECCCHHHHHHH
T ss_conf             9889556886316998299699998589725999999999999986--------------58968999813799999999


Q ss_pred             HHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf             99998741011000-12137688998999999986278078258998899999988640224447467767135325664
Q gi|254780332|r  281 IISEQTEVPSSKIR-RGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSK  359 (504)
Q Consensus       281 ~is~~s~I~~~~i~-~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~  359 (504)
T Consensus        67 ~~~~--g~~~~~~~~~g~l~i~------d~~~~~~--~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~  135 (231)
T pfam06745        67 AKSF--GWDLEKLEEEGKLAII------DASTSGI--G-IAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLL  135 (231)
T ss_pred             HHHC--CCCHHHHHHCCCEEEE------ECCCCCC--C-CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC
T ss_conf             9982--9985898646967898------6254422--2-10011227999999999999997199889997641640058


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-HCCEEEEEECHHHCCCCCCC
Q ss_conf             43211378899999999999988279199977138220168999984010143242233-13878897255661644233
Q gi|254780332|r  360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ-DADVVLFVIRDEYYIRNKEP  438 (504)
Q Consensus       360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq-dAD~v~~l~R~~~y~~~~~~  438 (504)
T Consensus       136 ~-----~~~~r~~l~~l~~~lk~~g~t~l~t~e~~~~~-------~----~~~~~~~~~~l~D~vI~L~~~~~~~-----  194 (231)
T pfam06745       136 K-----PAMAREILRRLKRVLKKLGVTAIFTSEKPSGE-------G----GIGGYGVEEFVVDGVIRLDLKEIEG-----  194 (231)
T ss_pred             C-----HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-------C----CCCCCCHHHHEEEEEEEEEEECCCC-----
T ss_conf             8-----99999999999999997699199998212577-------7----6567630111003699999882499-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf             332221110000001123388389999740899725999997
Q gi|254780332|r  439 TNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF  480 (504)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f  480 (504)
T Consensus       195 -------------------~~~R~l~I~K~Rg~~~~~~~~~f  217 (231)
T pfam06745       195 -------------------ELVRTIEIVKMRGTPHSMKRYPF  217 (231)
T ss_pred             -------------------EEEEEEEEEECCCCCCCCCEEEE
T ss_conf             -------------------89999999986699878947999