HHsearch alignment for GI: 254780332 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.72 E-value=2.3e-15 Score=136.45 Aligned_cols=214 Identities=25% Similarity=0.263 Sum_probs=139.2
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~--------------~ge~~lYis~ee~~~~l~~~ 66 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALE--------------YGEPGVYVTLEEPPEDLREN 66 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEEECCCHHHHHHH
T ss_conf 9889556886316998299699998589725999999999999986--------------58968999813799999999
Q ss_pred HHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC
Q ss_conf 99998741011000-12137688998999999986278078258998899999988640224447467767135325664
Q gi|254780332|r 281 IISEQTEVPSSKIR-RGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSK 359 (504)
Q Consensus 281 ~is~~s~I~~~~i~-~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~ 359 (504)
T Consensus 67 ~~~~--g~~~~~~~~~g~l~i~------d~~~~~~--~-~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~ 135 (231)
T pfam06745 67 AKSF--GWDLEKLEEEGKLAII------DASTSGI--G-IAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLL 135 (231)
T ss_pred HHHC--CCCHHHHHHCCCEEEE------ECCCCCC--C-CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC
T ss_conf 9982--9985898646967898------6254422--2-10011227999999999999997199889997641640058
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-HCCEEEEEECHHHCCCCCCC
Q ss_conf 43211378899999999999988279199977138220168999984010143242233-13878897255661644233
Q gi|254780332|r 360 KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQ-DADVVLFVIRDEYYIRNKEP 438 (504)
Q Consensus 360 ~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEq-dAD~v~~l~R~~~y~~~~~~ 438 (504)
T Consensus 136 ~-----~~~~r~~l~~l~~~lk~~g~t~l~t~e~~~~~-------~----~~~~~~~~~~l~D~vI~L~~~~~~~----- 194 (231)
T pfam06745 136 K-----PAMAREILRRLKRVLKKLGVTAIFTSEKPSGE-------G----GIGGYGVEEFVVDGVIRLDLKEIEG----- 194 (231)
T ss_pred C-----HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-------C----CCCCCCHHHHEEEEEEEEEEECCCC-----
T ss_conf 8-----99999999999999997699199998212577-------7----6567630111003699999882499-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 332221110000001123388389999740899725999997
Q gi|254780332|r 439 TNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480 (504)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f 480 (504)
T Consensus 195 -------------------~~~R~l~I~K~Rg~~~~~~~~~f 217 (231)
T pfam06745 195 -------------------ELVRTIEIVKMRGTPHSMKRYPF 217 (231)
T ss_pred -------------------EEEEEEEEEECCCCCCCCCEEEE
T ss_conf -------------------89999999986699878947999